Name: Thermosulfurimonas marina SU872
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159186

Type strain:

Species: Thermosulfurimonas marina

Strain Designation: SU872

Culture col. no.: DSM 104922, VKM B-3177

Strain history: <- A. Slobodkin, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; SU872 <- Slobodkin A {2015}

NCBI tax ID(s): 2047767 (species)

SI-ID 398296

DSM 104922

Section

Thermosulfurimonas marina SU872 is an anaerobe, thermophilic, Gram-negative bacterium that was isolated from sediment of shallow-sea hydrothermal vent.

Gram-negative
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Thermodesulfobacteriota*
	Class	*Thermodesulfobacteria*
	Order	*Thermodesulfobacteriales*
	Family	*Thermodesulfobacteriaceae*
	Genus	*Thermosulfurimonas*
	Species	**Thermosulfurimonas marina**
	Full Scientific Name (LPSN)	Thermosulfurimonas marina Frolova et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.994

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66009]

Culture medium

THERMOSULFURIMONAS MEDIUM (DSMZ Medium 1210a)

[Ref.: #66009]

Culture medium growth

[Ref.: #66009]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66009]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66009]			growth	70 °C

[Ref.: #66009]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %99.999

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %99.226

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.983
[Ref.: #69481]	Ability of spore formation	no Confidence in %99

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66009]	Sample type/isolated from	sediment of shallow-sea hydrothermal vent
[Ref.: #66009]	Geographic location (country and/or sea, region)	Sakhalin Oblast, Sea of Okhotsk, near Kunashir Island
[Ref.: #66009]	Country	Russia
[Ref.: #66009]	Country ISO 3 Code	RUS
[Ref.: #66009]	Continent	Europe
[Ref.: #66009]	Geographic location	44.4911°/146.1040°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66009]	Thermosulfurimonas sp. SU872 16S ribosomal RNA gene, partial sequence	KY953157	1537	ENA	2047767 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermosulfurimonas marina SU872	GCA_012317585	complete	GenBank	2047767 tax ID	*

[Ref.: #66009]

GC-content

54.9 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermosulfurimonas marina SU872 NCBI: GCA_012317585.1
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermosulfurimonas marina SU872 NCBI: GCA_012317585.1
[Ref.: #69480]	motile	yes	90.614	no
[Ref.: #69480]	flagellated	no	89.245	no
[Ref.: #69480]	gram-positive	no	99.544	no
[Ref.: #69480]	anaerobic	yes	99.661	no
[Ref.: #69480]	aerobic	no	99.501	no
[Ref.: #69480]	halophile	no	78.023	no
[Ref.: #69480]	spore-forming	no	95.337	no
[Ref.: #69480]	glucose-util	no	57.616	no
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	glucose-ferment	no	85.813	no

Availability in culture collections External links

[Ref.: #66009]

Culture collection no.

DSM 104922, VKM B-3177

[Ref.: #111689]

SI-ID 398296

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete genome sequence of Thermosulfurimonas marina SU872(T), an anaerobic thermophilic chemolithoautotrophic bacterium isolated from a shallow marine hydrothermal vent.	Allioux M, Jebbar M, Slobodkina G, Slobodkin A, Moalic Y, Frolova A, Shao Z, Alain K	Mar Genomics	10.1016/j.margen.2020.100800	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66009

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104922

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111689

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398296.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Thermosulfurimonas marina in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF