Diplocloster agilis (DSM 102154, Sanger_33, JCM 34981)

Name: Diplocloster agilis (DSM 102154, Sanger_33, JCM 34981)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159085

Type strain

Strain Designation Sanger_33

Culture col. no. DSM 102154 Sanger_33 JCM 34981

NCBI tax ID(s) 2850323

Special Collections DSMZ Sanger human gut JCM

History <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; Sanger_33 (Suonthocola fibrivorans) <- H. Browne; {2014}

Links

Diplocloster agilis Sanger_33 is a bacterium that was isolated from faeces from healthy human.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 397250

JCM 34981,VKM B-3497,DSM 102154

@ref 20215

Last LPSN update 2026-02-09 11:38:30

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Lachnospiraceae

Genus Diplocloster

Species Diplocloster agilis

Full scientific name Diplocloster agilis Chaplin et al. 2022

Synonyms (1)

Suonthocola fibrivorans

BacDive ID	Other strains from **Diplocloster agilis** (1)	Type strain
168259	D. agilis ASD5720, VKM B-3497, JCM 34353 (type strain)

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65908	PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)		Medium recipe at MediaDive	Name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l Na2CO3 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water
65908	CMC MEDIUM (N2/CO2) (DSMZ Medium 110a)		Medium recipe at MediaDive	Name: CMC MEDIUM (N2/CO2) (DSMZ Medium 110a) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Yeast extract 5.0 g/l K2HPO4 5.0 g/l D-Glucose 4.0 g/l Na2CO3 1.5 g/l Cellobiose 1.0 g/l Maltose 1.0 g/l Starch 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l Sodium resazurin 0.0005 g/l NaOH Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
65908	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	anaerobe	98.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
65908	faeces from healthy human	Cambridgeshire, Hinxton	United Kingdom	GBR	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2556744v1 assembly for Diplocloster agilis Sanger_33	scaffold	GCA_025567445	2981623.5	8071646289	2981623	43.54

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Suonthocola fibrivorans Sanger_33
NCBI: GCA_025567445

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	82.20	no
125439	motility	BacteriaNetⓘ	yes	81.20	no
125439	gram_stain	BacteriaNetⓘ	variable	84.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	98.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Suonthocola fibrivorans Sanger_33
NCBI: GCA_025567445.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	74.27	no
125438	anaerobic	anaerobicⓘ	yes	79.76	no
125438	aerobic	aerobicⓘ	no	88.68	no
125438	spore-forming	spore-formingⓘ	yes	64.16	no
125438	thermophilic	thermophileⓘ	no	90.25	yes
125438	flagellated	motile2+ⓘ	yes	53.33	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65908	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102154
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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