Strain identifier
BacDive ID: 159085
Type strain: 
Species: Suonthocola fibrivorans
Strain Designation: Sanger_33
Strain history: <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; Sanger_33 <- H. Browne {2014}
NCBI tax ID(s): 2981623 (species)
version 9.3 (current version)
General
@ref: 65908
BacDive-ID: 159085
DSM-Number: 102154
keywords: genome sequence, Bacteria, mesophilic
description: Suonthocola fibrivorans Sanger_33 is a mesophilic bacterium that was isolated from faeces from healthy human.
NCBI tax id
- NCBI tax id: 2981623
- Matching level: species
strain history
- @ref: 65908
- history: <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; Sanger_33 <- H. Browne {2014}
doi: 10.13145/bacdive159085.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Lachnospiraceae
- genus: Suonthocola
- species: Suonthocola fibrivorans
- full scientific name: Suonthocola fibrivorans Hitch et al. 2022
@ref: 65908
domain: Bacteria
phylum: Bacillota
class: Clostridia
order: Eubacteriales
family: Lachnospiraceae
genus: Suonthocola
species: Suonthocola fibrivorans
full scientific name: Suonthocola fibrivorans
strain designation: Sanger_33
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 65908 | PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c) | yes | https://mediadive.dsmz.de/medium/104c | Name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l Na2CO3 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water |
| 65908 | CMC MEDIUM (N2/CO2) (DSMZ Medium 110a) | yes | https://mediadive.dsmz.de/medium/110a | Name: CMC MEDIUM (N2/CO2) (DSMZ Medium 110a) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Yeast extract 5.0 g/l K2HPO4 5.0 g/l D-Glucose 4.0 g/l Na2CO3 1.5 g/l Cellobiose 1.0 g/l Maltose 1.0 g/l Starch 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l Sodium resazurin 0.0005 g/l NaOH Distilled water |
culture temp
- @ref: 65908
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: anaerobe
- confidence: 98.6
Isolation, sampling and environmental information
isolation
- @ref: 65908
- sample type: faeces from healthy human
- geographic location: Cambridgeshire, Hinxton
- country: United Kingdom
- origin.country: GBR
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Sequence information
Genome sequences
- @ref: 66792
- description: Suonthocola fibrivorans Sanger_33
- accession: GCA_025567445
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 2981623
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 74.266 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 79.762 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 88.684 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 64.164 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 90.247 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 53.329 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 82.2 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 81.2 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | variable | 84.4 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | anaerobe | 98.6 |
External links
@ref: 65908
culture collection no.: DSM 102154, JCM 34981
straininfo link
- @ref: 111595
- straininfo: 397250
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 65908 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102154 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102154) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 111595 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397250.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |