Name: Thermanaerosceptrum fracticalcis DRI-13
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158955

Type strain:

Species: Thermanaerosceptrum fracticalcis

Strain Designation: DRI-13

Culture col. no.: DSM 100382, ATCC TSD-12

Strain history: <- S. Hamilton-Brehm, Desert Research Inst. (DRI), Las Vegas, Nevada, USA; DRI-13 <- S. Hamilton-Brehm and L. Stewart {2013}

NCBI tax ID(s): 1712410 (species)

SI-ID 402668

DSM 100382

Section

Thermanaerosceptrum fracticalcis DRI-13 is an anaerobe, spore-forming, thermophilic bacterium that was isolated from borehole into a subsurface carbonate aquifer.

motile
spore-forming
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Peptococcaceae*
	Genus	*Thermanaerosceptrum*
	Species	**Thermanaerosceptrum fracticalcis**
	Full Scientific Name (LPSN)	Thermanaerosceptrum fracticalcis corrig. Hamilton-Brehm et al. 2021

Synonym

Thermoanaerosceptrum fracticalcis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %99.719

[Ref.: #69480]	Motility	yes Confidence in %95.168

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65778]

Culture medium

DESULFOFARCIMEN MEDIUM (DSMZ Medium 124)

[Ref.: #65778]

Culture medium growth

[Ref.: #65778]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65778]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #65778]			growth	55 °C

[Ref.: #65778]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %95.441

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %99.708

[Ref.: #69480]	Ability of spore formation	yes Confidence in %100
[Ref.: #69481]	Ability of spore formation	yes Confidence in %93

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65778]	Sample type/isolated from	borehole (900 meters) into a subsurface carbonate aquifer
[Ref.: #65778]	Geographic location (country and/or sea, region)	southern Nevada Desert
[Ref.: #65778]	Country	USA
[Ref.: #65778]	Country ISO 3 Code	USA
[Ref.: #65778]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Geologic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KR014122 (>99% sequence identity) for Thermoanaerosceptrum fracticalcis subclade from Microbeatlas

Aquatic Samples	61
Soil Samples	15
Animal Samples	5
Plant Samples	3
Total Samples	84

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65778]	Thermoanaerosceptrum fracticalcis strain DRI-13 16S ribosomal RNA gene, partial sequence	KR014122	1463	ENA	1712410 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermanaerosceptrum fracticalcis DRI-13	GCA_000746025	complete	GenBank	1712410 tax ID	*

[Ref.: #65778]

GC-content

45.2 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermanaerosceptrum fracticalcis DRI-13 NCBI: GCA_000746025.2
[Ref.: #69481]	spore-forming	yes	93	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermanaerosceptrum fracticalcis DRI-13 NCBI: GCA_000746025.1
[Ref.: #69480]	motile	yes	87.886	no
[Ref.: #69480]	flagellated	no	84.992	no
[Ref.: #69480]	gram-positive	no	82.688	no
[Ref.: #69480]	anaerobic	yes	99.354	no
[Ref.: #69480]	aerobic	no	98.126	no
[Ref.: #69480]	halophile	no	93.046	no
[Ref.: #69480]	spore-forming	yes	91.025	no
[Ref.: #69480]	thermophile	yes	98.573	yes
[Ref.: #69480]	glucose-util	yes	78.572	no
[Ref.: #69480]	glucose-ferment	no	72.936	no
[Ref.: #69480]	motile	yes	87.886	no
[Ref.: #69480]	flagellated	no	84.992	no
[Ref.: #69480]	gram-positive	no	82.688	no
[Ref.: #69480]	anaerobic	yes	99.354	no
[Ref.: #69480]	aerobic	no	98.126	no
[Ref.: #69480]	halophile	no	93.046	no
[Ref.: #69480]	spore-forming	yes	91.025	no
[Ref.: #69480]	thermophile	yes	98.573	yes
[Ref.: #69480]	glucose-util	yes	78.572	no
[Ref.: #69480]	glucose-ferment	no	72.936	no

Availability in culture collections External links

[Ref.: #65778]

Culture collection no.

DSM 100382, ATCC TSD-12

[Ref.: #111471]

SI-ID 402668

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermoanaerosceptrum fracticalcis gen. nov. sp. nov., a Novel Fumarate-Fermenting Microorganism From a Deep Fractured Carbonate Aquifer of the US Great Basin.	Hamilton-Brehm SD, Stewart LE, Zavarin M, Caldwell M, Lawson PA, Onstott TC, Grzymski J, Neveux I, Lollar BS, Russell CE, Moser DP	Front Microbiol	10.3389/fmicb.2019.02224	2019	*
Genetics	Hybrid genome de novo assembly with methylome analysis of the anaerobic thermophilic subsurface bacterium Thermanaerosceptrum fracticalcis strain DRI-13(T).	Murphy TR, Xiao R, Hamilton-Brehm SD	BMC Genomics	10.1186/s12864-021-07535-z	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65778

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100382

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111471

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402668.1 )

* These data were automatically processed and therefore are not curated

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