Collinsella aerofaciens (DSM 108837, WCA-178-WT-3 (M2))

Name: Collinsella aerofaciens (DSM 108837, WCA-178-WT-3 (M2))
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158954

Type strain

Strain Designation WCA-178-WT-3 (M2)

Culture col. no. DSM 108837 WCA-178-WT-3 (M2)

NCBI tax ID(s) 74426

Special Collections DSMZ Pig DZIF

History <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; WCA-178-WT-3 (M2)

Links

Collinsella aerofaciens WCA-178-WT-3 is a bacterium that was isolated from feces; pig , 3 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli protein.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 405283

DSM 108837

@ref 20215

Last LPSN update 2026-02-09 11:38:28

Domain Bacteria

Phylum Actinomycetota

Class Coriobacteriia

Order Coriobacteriales

Family Coriobacteriaceae

Genus Collinsella

Species Collinsella aerofaciens

Full scientific name Collinsella aerofaciens (Eggerth 1935) Kageyama et al. 1999

Synonyms (2)

Eubacterium aerofaciens
"Bacteroides aerofaciens"

BacDive ID	Other strains from **Collinsella aerofaciens** (48)	Type strain
3044	C. aerofaciens CCUG 28087, JCM 10188, DSM 3979, ATCC 25986, ... (type strain)
3045	C. aerofaciens H818, DSM 13712
150433	C. aerofaciens CCUG 39917
150434	C. aerofaciens CCUG 39918
156755	C. aerofaciens CCUG 64885
158950	C. aerofaciens H2_9, DSM 108202
158951	C. aerofaciens H1_8, DSM 108203
158952	C. aerofaciens H5_8, DSM 108204
158953	C. aerofaciens WCA1-178-WT-3 (M1), DSM 108492
161038	C. aerofaciens JCM 10772
161039	C. aerofaciens JCM 10773
161040	C. aerofaciens JCM 10774
161041	C. aerofaciens JCM 10775
161042	C. aerofaciens JCM 10777
161043	C. aerofaciens JCM 10778
161044	C. aerofaciens JCM 10779
161045	C. aerofaciens JCM 10780
161046	C. aerofaciens JCM 10781
161047	C. aerofaciens JCM 10782
161048	C. aerofaciens JCM 10783
161049	C. aerofaciens JCM 10784
161050	C. aerofaciens JCM 10785
161051	C. aerofaciens JCM 10786
161052	C. aerofaciens JCM 10787
161053	C. aerofaciens JCM 10788
161054	C. aerofaciens JCM 10789
161055	C. aerofaciens JCM 10790
161056	C. aerofaciens JCM 10791
161057	C. aerofaciens JCM 10792
161058	C. aerofaciens JCM 10793
161059	C. aerofaciens JCM 10794
161060	C. aerofaciens JCM 10795
161061	C. aerofaciens JCM 10796
161062	C. aerofaciens JCM 10797
161063	C. aerofaciens JCM 10798
161064	C. aerofaciens JCM 10799
161065	C. aerofaciens JCM 10800
161066	C. aerofaciens JCM 10801
161067	C. aerofaciens JCM 10802
161068	C. aerofaciens JCM 10803
161069	C. aerofaciens JCM 10804
161070	C. aerofaciens JCM 10805
161071	C. aerofaciens JCM 10806
161072	C. aerofaciens JCM 10807
161073	C. aerofaciens JCM 10808
161075	C. aerofaciens JCM 10826
165615	C. aerofaciens JCM 7790, ATCC 35085
165616	C. aerofaciens JCM 7791, ATCC 29738

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65777	FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)		Medium recipe at MediaDive	Name: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
65777	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	anaerobe	92.249

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
65777	feces; pig , 3 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli (APC) protein	Kranzberg (Bavaria)	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence MN537549 (>99% sequence identity) for Collinsella aerofaciens subclade from Microbeatlas

Aquatic Samples	10797
Soil Samples	2340
Animal Samples	216978
Plant Samples	837
Total Samples	230952

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
65777	2	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM969630v1 assembly for Collinsella sp. WCA1-178-WT-3 (M2)	contig	GCA_009696305	2605780.3	2899504685	2605780	62.89

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65777	Collinsella aerofaciens strain DSM 108837 16S ribosomal RNA gene, partial sequence	MN537549	1336		74426

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Collinsella sp. WCA1-178-WT-3 (M2) strain WCA1-178-WT-3 (M2) strain WCA1-178-WT-3 (M2) strain WCA1-178-WT-3 (M2)
PATRIC: 2605780.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	82.60	no
125438	anaerobic	anaerobicⓘ	yes	92.25	no
125438	spore-forming	spore-formingⓘ	no	80.94	no
125438	aerobic	aerobicⓘ	no	97.68	no
125438	thermophilic	thermophileⓘ	no	93.43	yes
125438	flagellated	motile2+ⓘ	no	82.60	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65777	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108837
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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