Name: Collinsella aerofaciens WCA-178-WT-3 (M2)
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158954

Type strain:

Species: Collinsella aerofaciens

Strain Designation: WCA-178-WT-3 (M2)

Culture col. no.: DSM 108837

Strain history: <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; WCA-178-WT-3 (M2)

NCBI tax ID(s): 74426 (species)

SI-ID 405283

DSM 108837

Other strains from Collinsella aerofaciens

Section

Collinsella aerofaciens WCA-178-WT-3 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from feces; pig , 3 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli protein.

Gram-positive
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Coriobacteriia*
	Order	*Coriobacteriales*
	Family	*Coriobacteriaceae*
	Genus	*Collinsella*
	Species	**Collinsella aerofaciens**
	Full Scientific Name (LPSN)	Collinsella aerofaciens (Eggerth 1935) Kageyama et al. 1999

	Synonym	"Bacteroides* aerofaciens"*
	Synonym	Eubacterium aerofaciens

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65777]

Culture medium

FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)

[Ref.: #65777]

Culture medium growth

[Ref.: #65777]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65777]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #65777]			growth	37 °C

[Ref.: #65777]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %99.999

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65777]	Sample type/isolated from	feces; pig , 3 month old, genotype: APC1311/+ referring to the adenomatous-polyposis-coli (APC) protein
[Ref.: #65777]	Geographic location (country and/or sea, region)	Kranzberg (Bavaria)
[Ref.: #65777]	Country	Germany
[Ref.: #65777]	Country ISO 3 Code	DEU
[Ref.: #65777]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MN537549 (>99% sequence identity) for Collinsella aerofaciens subclade from Microbeatlas

Aquatic Samples	10797
Soil Samples	2340
Animal Samples	216978
Plant Samples	837
Total Samples	230952

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #65777]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65777]	Collinsella aerofaciens strain DSM 108837 16S ribosomal RNA gene, partial sequence	MN537549	1336	ENA	74426 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Collinsella sp. WCA1-178-WT-3 (M2) strain WCA1-178-WT-3 (M2) strain WCA1-178-WT-3 (M2) strain WCA1-178-WT-3 (M2)	2605780.3	wgs	PATRIC	2605780 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Collinsella sp. WCA1-178-WT-3 (M2) strain WCA1-178-WT-3 (M2) strain WCA1-178-WT-3 (M2) strain WCA1-178-WT-3 (M2) PATRIC: 2605780.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Collinsella sp. WCA1-178-WT-3 (M2) strain WCA1-178-WT-3 (M2) strain WCA1-178-WT-3 (M2) strain WCA1-178-WT-3 (M2) PATRIC: 2605780.3
[Ref.: #69480]	motile	no	92.761	no
[Ref.: #69480]	gram-positive	yes	94.085	no
[Ref.: #69480]	anaerobic	yes	99.602	no
[Ref.: #69480]	aerobic	no	99.089	no
[Ref.: #69480]	halophile	no	82.395	no
[Ref.: #69480]	spore-forming	no	94.409	no
[Ref.: #69480]	glucose-util	yes	80.693	no
[Ref.: #69480]	flagellated	no	96.96	no
[Ref.: #69480]	thermophile	no	93.476	no
[Ref.: #69480]	glucose-ferment	yes	74.722	no

Availability in culture collections External links

[Ref.: #65777]

Culture collection no.

DSM 108837

[Ref.: #111470]

SI-ID 405283

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65777

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108837

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111470

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405283.1 )

* These data were automatically processed and therefore are not curated

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Collinsella sp. WCA1-178-WT-3 (M2) strain WCA1-178-WT-3 (M2) strain WCA1-178-WT-3 (M2) strain WCA1-178-WT-3 (M2)

Collinsella sp. WCA1-178-WT-3 (M2) strain WCA1-178-WT-3 (M2) strain WCA1-178-WT-3 (M2) strain WCA1-178-WT-3 (M2)

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