Name: Propionicimonas ferrireducens Y1A-10 4-9-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158818

Type strain:

Species: Propionicimonas ferrireducens

Strain Designation: Y1A-10 4-9-1

Culture col. no.: CCTCC AB 2016249, KCTC 15566, LMG 29810

Strain history: <- Guowei Zhou, China

NCBI tax ID(s): 1955624 (species)

Section

Propionicimonas ferrireducens Y1A-10 4-9-1 is a facultative anaerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from paddy soil.

colony-forming
Gram-positive
rod-shaped
facultative anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Propionibacteriaceae*
	Genus	*Propionicimonas*
	Species	**Propionicimonas ferrireducens**
	Full Scientific Name (LPSN)	Propionicimonas ferrireducens Zhou et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65582]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #65582]	Cell length	1.5-3.3 µm

[Ref.: #65582]	Cell width	0.15-0.2 µm

[Ref.: #65582]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #65582]	Colony color	white
[Ref.: #65582]	Colony shape	circular
[Ref.: #65582]	Incubation period	3 days
[Ref.: #65582]	Cultivation medium used	dissimilatory iron(III)-reducing bacteria agar medium

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65582]

Culture medium

dissimilatory iron(III)-reducing bacteria agar medium

[Ref.: #65582]

Culture medium growth

[Ref.: #65582]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #65582]	growth	20-40 °C
[Ref.: #65582]	optimum	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #65582]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65582]			optimum	7.0
[Ref.: #65582]			growth	4-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65582]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	anaerobe

[Ref.: #65582]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no

[Ref.: #67771]

Observation

quinones: MK-9(H4)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65582]	amygdalin ChEBI	+	builds acid from
[Ref.: #65582]	arbutin ChEBI	+	builds acid from
[Ref.: #65582]	D-glucose ChEBI	-	assimilation
[Ref.: #65582]	D-mannitol ChEBI	-	assimilation
[Ref.: #65582]	D-mannose ChEBI	-	assimilation
[Ref.: #65582]	esculin ChEBI	+	builds acid from
[Ref.: #65582]	ferric citrate ChEBI	+	builds acid from
[Ref.: #65582]	glucose ChEBI	+	fermentation
[Ref.: #65582]	L-arabinose ChEBI	-	assimilation
[Ref.: #65582]	malate ChEBI	-	assimilation
[Ref.: #65582]	maltose ChEBI	-	assimilation
[Ref.: #65582]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #65582]	methyl beta-D-xylopyranoside ChEBI	+	builds acid from
[Ref.: #65582]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #65582]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #65582]	nitrate ChEBI	+	reduction
[Ref.: #65582]	phenylacetate ChEBI	-	assimilation
[Ref.: #65582]	potassium 2-dehydro-D-gluconate	+	builds acid from
[Ref.: #65582]	potassium gluconate ChEBI	-	assimilation
[Ref.: #65582]	ribitol ChEBI	+	builds acid from
[Ref.: #65582]	sodium citrate ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65582]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65582]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65582]	arginine dihydrolase	+	3.5.3.6
[Ref.: #65582]	beta-galactosidase	+	3.2.1.23
[Ref.: #65582]	catalase	+	1.11.1.6
[Ref.: #65582]	cytochrome oxidase	-	1.9.3.1
[Ref.: #65582]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65582]	Sample type/isolated from	paddy soil
[Ref.: #65582]	Geographic location (country and/or sea, region)	Yingtan, Jiangxi Province
[Ref.: #65582]	Country	China
[Ref.: #65582]	Country ISO 3 Code	CHN
[Ref.: #65582]	Continent	Asia
[Ref.: #65582]	Geographic location	28.0333°/117.3670°
[Ref.: #65582]	Enrichment culture	DIRB
[Ref.: #65582]	Enrichment culture composition	MgCl2 . 6H2O (0.4 g/l), CaCl2 . H2O (0.1 g/l), NH4Cl (0.027 g/l), KH2PO4 (0.6 g/l), 1 ml/l vitamin solution, 1 ml/l trace element solution, 30 mmol/l bicarbonate, acetate (2 mmol/l) and ferrihydrite (10 mmol/l) and purged with N2/CO2 (80/20 %). pH 6.8-7.2
[Ref.: #65582]	Enrichment culture temperature	25 ̊C
[Ref.: #65582]	Isolation date	10000-fold d
[Ref.: #65582]	Isolation/enrichment procedure	in the dark

[Ref.: #67771]	Sample type/isolated from	From the DIRB enrichment obtained from paddy soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Yingtan, Jiangxi
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Field
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Condition	#Anoxic (anaerobic)	-
#Condition	#Humid	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65582]	16S rRNA gene sequence	MG775313		GenBank

[Ref.: #65582]	GC-content	63.9 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	63.9 mol%

Availability in culture collections External links

[Ref.: #65582]

Culture collection no.

CCTCC AB 2016249, KCTC 15566, LMG 29810

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Propionicimonas ferrireducens sp. nov., isolated from dissimilatory iron(III)-reducing microbial enrichment obtained from paddy soil.	Zhou GW, Yang XR, Wadaan MAM, Hozzein WN, Zheng BX, Su JQ, Zhu YG	Int J Syst Evol Microbiol	10.1099/ijsem.0.002766	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65582

Guo-Wei Zhou, Xiao-Ru Yang, Mohammed A. M. Wadaan, Wael N. Hozzein, Bang-Xiao Zheng, Jian-Qiang Su and Yong-Guan Zhu: Propionicimonas ferrireducens sp. nov., isolated from dissimilatory iron(III)-reducing microbial enrichment obtained from paddy soil. IJSEM 68: 1914 - 1918 2018 ( DOI 10.1099/ijsem.0.002766 , PubMed 29676718 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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