Name: Propionicimonas ferrireducens Y1A-10 4-9-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158818

Type strain:

Species: Propionicimonas ferrireducens

Strain Designation: Y1A-10 4-9-1

Culture col. no.: CCTCC AB 2016249, KCTC 15566, LMG 29810

Strain history: <- Guowei Zhou, China

NCBI tax ID(s): 1955624 (species)

Special Collections

Section

Propionicimonas ferrireducens Y1A-10 4-9-1 is a facultative anaerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from paddy soil.

colony-forming
Gram-positive
rod-shaped
facultative anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Propionibacteriaceae*
	Genus	*Propionicimonas*
	Species	**Propionicimonas ferrireducens**
	Full Scientific Name (LPSN)	Propionicimonas ferrireducens Zhou et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65582]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #65582]	Cell length	1.5-3.3 µm

[Ref.: #65582]	Cell width	0.15-0.2 µm

[Ref.: #65582]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #65582]	Colony color	white
[Ref.: #65582]	Colony shape	circular
[Ref.: #65582]	Incubation period	3 days
[Ref.: #65582]	Cultivation medium used	dissimilatory iron(III)-reducing bacteria agar medium

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65582]

Culture medium

dissimilatory iron(III)-reducing bacteria agar medium

[Ref.: #65582]

Culture medium growth

[Ref.: #65582]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #65582]	growth	20-40 °C
[Ref.: #65582]	optimum	30 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #65582]			optimum	7.0
[Ref.: #65582]			growth	4-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65582]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	anaerobe

[Ref.: #65582]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no

[Ref.: #67771]

Observation

quinones: MK-9(H4)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65582]	amygdalin ChEBI	+	builds acid from
[Ref.: #65582]	arbutin ChEBI	+	builds acid from
[Ref.: #65582]	D-glucose ChEBI	-	assimilation
[Ref.: #65582]	D-mannitol ChEBI	-	assimilation
[Ref.: #65582]	D-mannose ChEBI	-	assimilation
[Ref.: #65582]	esculin ChEBI	+	builds acid from
[Ref.: #65582]	ferric citrate ChEBI	+	builds acid from
[Ref.: #65582]	glucose ChEBI	+	fermentation
[Ref.: #65582]	L-arabinose ChEBI	-	assimilation
[Ref.: #65582]	malate ChEBI	-	assimilation
[Ref.: #65582]	maltose ChEBI	-	assimilation
[Ref.: #65582]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #65582]	methyl beta-D-xylopyranoside ChEBI	+	builds acid from
[Ref.: #65582]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #65582]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #65582]	nitrate ChEBI	+	reduction
[Ref.: #65582]	phenylacetate ChEBI	-	assimilation
[Ref.: #65582]	potassium 2-dehydro-D-gluconate	+	builds acid from
[Ref.: #65582]	potassium gluconate ChEBI	-	assimilation
[Ref.: #65582]	ribitol ChEBI	+	builds acid from
[Ref.: #65582]	sodium citrate ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65582]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65582]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65582]	arginine dihydrolase	+	3.5.3.6
[Ref.: #65582]	beta-galactosidase	+	3.2.1.23
[Ref.: #65582]	catalase	+	1.11.1.6
[Ref.: #65582]	cytochrome oxidase	-	1.9.3.1
[Ref.: #65582]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65582]	Sample type/isolated from	paddy soil
[Ref.: #65582]	Geographic location (country and/or sea, region)	Yingtan, Jiangxi Province
[Ref.: #65582]	Country	China
[Ref.: #65582]	Country ISO 3 Code	CHN
[Ref.: #65582]	Continent	Asia
[Ref.: #65582]	Geographic location	28.0333°/117.3670°
[Ref.: #65582]	Enrichment culture	DIRB
[Ref.: #65582]	Enrichment culture composition	MgCl2 . 6H2O (0.4 g/l), CaCl2 . H2O (0.1 g/l), NH4Cl (0.027 g/l), KH2PO4 (0.6 g/l), 1 ml/l vitamin solution, 1 ml/l trace element solution, 30 mmol/l bicarbonate, acetate (2 mmol/l) and ferrihydrite (10 mmol/l) and purged with N2/CO2 (80/20 %). pH 6.8-7.2
[Ref.: #65582]	Enrichment culture temperature	25 ̊C
[Ref.: #65582]	Isolation date	10000-fold d
[Ref.: #65582]	Isolation/enrichment procedure	in the dark

[Ref.: #67771]	Sample type/isolated from	From the DIRB enrichment obtained from paddy soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Yingtan, Jiangxi
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Field
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Condition	#Anoxic (anaerobic)	-
#Condition	#Humid	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65582]	Propionicimonas ferrireducens strain Y1A-10 4-9-1 16S ribosomal RNA gene, partial sequence	MG775313		GenBank ENA

[Ref.: #65582]	GC-content	63.9 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	63.9 mol%

Availability in culture collections External links

[Ref.: #65582]

Culture collection no.

CCTCC AB 2016249, KCTC 15566, LMG 29810

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Propionicimonas ferrireducens sp. nov., isolated from dissimilatory iron(III)-reducing microbial enrichment obtained from paddy soil.	Zhou GW, Yang XR, Wadaan MAM, Hozzein WN, Zheng BX, Su JQ, Zhu YG	Int J Syst Evol Microbiol	10.1099/ijsem.0.002766	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65582

Guo-Wei Zhou, Xiao-Ru Yang, Mohammed A. M. Wadaan, Wael N. Hozzein, Bang-Xiao Zheng, Jian-Qiang Su and Yong-Guan Zhu: Propionicimonas ferrireducens sp. nov., isolated from dissimilatory iron(III)-reducing microbial enrichment obtained from paddy soil. IJSEM 68: 1914 - 1918 2018 ( DOI 10.1099/ijsem.0.002766 , PubMed 29676718 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Propionicimonas ferrireducens in external resources:
SILVA
BRENDA
PANGAEA
GBIF