Name: Paenibacillus yanchengensis J-3
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158816

Type strain:

Species: Paenibacillus yanchengensis

Strain Designation: J-3

Culture col. no.: KCTC 33926, CGMCC 1.16455

NCBI tax ID(s): 2035833 (species)

Special Collections

Section

Paenibacillus yanchengensis J-3 is an obligate aerobe, spore-forming, Gram-negative bacterium that forms circular colonies and was isolated from farmland soil.

colony-forming
Gram-negative
motile
rod-shaped
spore-forming
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus yanchengensis**
	Full Scientific Name (LPSN)	Paenibacillus yanchengensis Lu et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65580]	Gram stain	negative

[Ref.: #65580]	Cell length	2.3-4.8 µm

[Ref.: #65580]	Cell width	0.8-1.1 µm

[Ref.: #65580]	Cell shape	rod-shaped

[Ref.: #65580]	Motility	yes

[Ref.: #65580]	Colony size	1.0-2.0 mm
[Ref.: #65580]	Colony color	cream
[Ref.: #65580]	Colony shape	circular
[Ref.: #65580]	Incubation period	2 days
[Ref.: #65580]	Cultivation medium used	TSA

Information on culture and growth conditions Culture and growth conditions

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

NH4-YE

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Culture medium growth

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Culture medium

Trypticase Soy Agar (TSA)

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Culture medium growth

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Culture medium

MacConkey

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #65580]			growth	15-42 °C
[Ref.: #65580]			optimum	30 °C

	pH	Kind of pH		pH
[Ref.: #65580]			optimum	7.0-8.0
[Ref.: #65580]			growth	5.0-10.5

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

obligate aerobe

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Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65580]		NaCl		growth	0-6	%(w/v)
[Ref.: #65580]		NaCl		optimum	0.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65580]	(S)-lactate ChEBI	-	carbon source
[Ref.: #65580]	2-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #65580]	2-oxobutanoate ChEBI	-	carbon source
[Ref.: #65580]	2-oxoglutarate ChEBI	-	carbon source
[Ref.: #65580]	3-O-methyl-D-glucose ChEBI	-	carbon source
[Ref.: #65580]	4-hydroxyphenylacetic acid ChEBI	-	carbon source
[Ref.: #65580]	4-nitrophenyl beta-D-galactopyranoside ChEBI	+	assimilation
[Ref.: #65580]	acetate ChEBI	+/-	carbon source
[Ref.: #65580]	acetoacetate ChEBI	+/-	carbon source
[Ref.: #65580]	adipate ChEBI	-	assimilation
[Ref.: #65580]	amygdalin ChEBI	+	assimilation
[Ref.: #65580]	amygdalin ChEBI	+	builds acid from
[Ref.: #65580]	arbutin ChEBI	-	builds acid from
[Ref.: #65580]	beta-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #65580]	bromosuccinate ChEBI	-	carbon source
[Ref.: #65580]	cellobiose ChEBI	-	builds acid from
[Ref.: #65580]	citrate ChEBI	-	carbon source
[Ref.: #65580]	citrate ChEBI	+	assimilation
[Ref.: #65580]	D-arabinose ChEBI	+	builds acid from
[Ref.: #65580]	D-arabitol ChEBI	-	builds acid from
[Ref.: #65580]	D-arabitol ChEBI	-	carbon source
[Ref.: #65580]	D-aspartate ChEBI	-	carbon source
[Ref.: #65580]	D-fructose ChEBI	+/-	carbon source
[Ref.: #65580]	D-fructose 6-phosphate ChEBI	+/-	carbon source
[Ref.: #65580]	D-fucose ChEBI	-	builds acid from
[Ref.: #65580]	D-fucose ChEBI	+/-	carbon source
[Ref.: #65580]	D-galactose ChEBI	+	carbon source
[Ref.: #65580]	D-galacturonic acid ChEBI	+/-	carbon source
[Ref.: #65580]	D-gluconate ChEBI	-	carbon source
[Ref.: #65580]	D-glucose ChEBI	-	assimilation
[Ref.: #65580]	D-glucose ChEBI	+	assimilation
[Ref.: #65580]	D-glucose 6-phosphate ChEBI	+/-	carbon source
[Ref.: #65580]	D-lyxose ChEBI	-	builds acid from
[Ref.: #65580]	D-malate ChEBI	-	carbon source
[Ref.: #65580]	D-mannitol ChEBI	-	assimilation
[Ref.: #65580]	D-mannitol ChEBI	-	carbon source
[Ref.: #65580]	D-mannitol ChEBI	+	assimilation
[Ref.: #65580]	D-mannose ChEBI	-	assimilation
[Ref.: #65580]	D-mannose ChEBI	-	carbon source
[Ref.: #65580]	D-saccharate ChEBI	-	carbon source
[Ref.: #65580]	D-serine ChEBI	-	carbon source
[Ref.: #65580]	D-sorbitol ChEBI	-	assimilation
[Ref.: #65580]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #65580]	D-sorbitol ChEBI	-	carbon source
[Ref.: #65580]	D-tagatose ChEBI	-	builds acid from
[Ref.: #65580]	D-xylose ChEBI	+	builds acid from
[Ref.: #65580]	decanoate ChEBI	-	assimilation
[Ref.: #65580]	dextrin ChEBI	+/-	carbon source
[Ref.: #65580]	erythritol ChEBI	-	builds acid from
[Ref.: #65580]	esculin ChEBI	+	builds acid from
[Ref.: #65580]	esculin ferric citrate	+	assimilation
[Ref.: #65580]	formate ChEBI	-	carbon source
[Ref.: #65580]	fructose ChEBI	+	builds acid from
[Ref.: #65580]	galactarate ChEBI	-	carbon source
[Ref.: #65580]	galactitol ChEBI	-	builds acid from
[Ref.: #65580]	galactose ChEBI	+	builds acid from
[Ref.: #65580]	gamma-aminobutyric acid ChEBI	-	carbon source
[Ref.: #65580]	gelatin ChEBI	-	assimilation
[Ref.: #65580]	gelatin ChEBI	-	carbon source
[Ref.: #65580]	gelatin ChEBI	-	hydrolysis
[Ref.: #65580]	gentiobiose ChEBI	+	builds acid from
[Ref.: #65580]	gentiobiose ChEBI	+	carbon source
[Ref.: #65580]	glucose ChEBI	+	builds acid from
[Ref.: #65580]	glycerol ChEBI	-	builds acid from
[Ref.: #65580]	glycerol ChEBI	-	carbon source
[Ref.: #65580]	glycine-proline ChEBI	-	carbon source
[Ref.: #65580]	glycogen ChEBI	-	builds acid from
[Ref.: #65580]	inosine ChEBI	-	carbon source
[Ref.: #65580]	inulin ChEBI	-	builds acid from
[Ref.: #65580]	L-alanine ChEBI	-	carbon source
[Ref.: #65580]	L-arabinose ChEBI	-	assimilation
[Ref.: #65580]	L-arabinose ChEBI	+	assimilation
[Ref.: #65580]	L-arabinose ChEBI	+	builds acid from
[Ref.: #65580]	L-arabitol ChEBI	-	builds acid from
[Ref.: #65580]	L-arginine ChEBI	-	assimilation
[Ref.: #65580]	L-arginine ChEBI	+/-	carbon source
[Ref.: #65580]	L-aspartate ChEBI	-	carbon source
[Ref.: #65580]	L-fucose ChEBI	+	builds acid from
[Ref.: #65580]	L-fucose ChEBI	+/-	carbon source
[Ref.: #65580]	L-galactonic acid gamma-lactone ChEBI	+/-	carbon source
[Ref.: #65580]	L-glutamate ChEBI	-	carbon source
[Ref.: #65580]	L-histidine ChEBI	-	carbon source
[Ref.: #65580]	L-malate ChEBI	-	carbon source
[Ref.: #65580]	L-pyroglutamic acid ChEBI	-	carbon source
[Ref.: #65580]	L-rhamnose ChEBI	+	assimilation
[Ref.: #65580]	L-rhamnose ChEBI	+/-	carbon source
[Ref.: #65580]	L-serine ChEBI	-	carbon source
[Ref.: #65580]	L-tryptophan ChEBI	-	assimilation
[Ref.: #65580]	L-xylose ChEBI	-	builds acid from
[Ref.: #65580]	lactose ChEBI	+	builds acid from
[Ref.: #65580]	lactose ChEBI	+	carbon source
[Ref.: #65580]	malate ChEBI	+	assimilation
[Ref.: #65580]	maltose ChEBI	+	assimilation
[Ref.: #65580]	maltose ChEBI	+	builds acid from
[Ref.: #65580]	maltose ChEBI	+	carbon source
[Ref.: #65580]	mannitol ChEBI	-	builds acid from
[Ref.: #65580]	mannose ChEBI	+	builds acid from
[Ref.: #65580]	melezitose ChEBI	-	builds acid from
[Ref.: #65580]	melibiose ChEBI	+	assimilation
[Ref.: #65580]	melibiose ChEBI	+	builds acid from
[Ref.: #65580]	melibiose ChEBI	+	carbon source
[Ref.: #65580]	methyl (R)-lactate ChEBI	-	carbon source
[Ref.: #65580]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #65580]	methyl alpha-D-mannoside ChEBI	+	builds acid from
[Ref.: #65580]	methyl beta-D-glucopyranoside ChEBI	-	carbon source
[Ref.: #65580]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #65580]	methyl pyruvate ChEBI	-	carbon source
[Ref.: #65580]	myo-inositol ChEBI	-	assimilation
[Ref.: #65580]	myo-inositol ChEBI	-	builds acid from
[Ref.: #65580]	myo-inositol ChEBI	-	carbon source
[Ref.: #65580]	N-acetyl-D-mannosamine ChEBI	-	carbon source
[Ref.: #65580]	N-acetylgalactosamine ChEBI	-	carbon source
[Ref.: #65580]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #65580]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #65580]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #65580]	pectin ChEBI	+	carbon source
[Ref.: #65580]	phenylacetate ChEBI	-	assimilation
[Ref.: #65580]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #65580]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #65580]	potassium gluconate ChEBI	-	assimilation
[Ref.: #65580]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #65580]	potassium nitrate ChEBI	-	assimilation
[Ref.: #65580]	propionate ChEBI	-	carbon source
[Ref.: #65580]	quinate ChEBI	-	carbon source
[Ref.: #65580]	raffinose ChEBI	+	builds acid from
[Ref.: #65580]	rhamnose ChEBI	+	builds acid from
[Ref.: #65580]	ribitol ChEBI	-	builds acid from
[Ref.: #65580]	salicin ChEBI	-	carbon source
[Ref.: #65580]	salicin ChEBI	+	builds acid from
[Ref.: #65580]	sodium citrate ChEBI	-	assimilation
[Ref.: #65580]	sorbose ChEBI	-	builds acid from
[Ref.: #65580]	starch ChEBI	-	builds acid from
[Ref.: #65580]	sucrose ChEBI	+	assimilation
[Ref.: #65580]	sucrose ChEBI	+	builds acid from
[Ref.: #65580]	sucrose ChEBI	+	carbon source
[Ref.: #65580]	trehalose ChEBI	+	builds acid from
[Ref.: #65580]	trehalose ChEBI	+	carbon source
[Ref.: #65580]	turanose ChEBI	+	builds acid from
[Ref.: #65580]	turanose ChEBI	+	carbon source
[Ref.: #65580]	tween 40 ChEBI	-	carbon source
[Ref.: #65580]	urea ChEBI	-	assimilation
[Ref.: #65580]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #65580]	amikacin ChEBI	yes
[Ref.: #65580]	ampicillin ChEBI	yes
[Ref.: #65580]	bacitracin ChEBI		yes
[Ref.: #65580]	cefalotin ChEBI	yes
[Ref.: #65580]	cefazolin ChEBI	yes
[Ref.: #65580]	cephradine ChEBI	yes
[Ref.: #65580]	chloramphenicol ChEBI	yes
[Ref.: #65580]	ciprofloxacin ChEBI	yes
[Ref.: #65580]	erythromycin ChEBI	yes
[Ref.: #65580]	gentamicin ChEBI	yes
[Ref.: #65580]	lincomycin ChEBI	yes
[Ref.: #65580]	neomycin ChEBI	yes
[Ref.: #65580]	novobiocin ChEBI	yes
[Ref.: #65580]	ofloxacin ChEBI	yes
[Ref.: #65580]	penicillin ChEBI	yes
[Ref.: #65580]	polymyxin ChEBI	yes
[Ref.: #65580]	rifampicin ChEBI	yes
[Ref.: #65580]	spectinomycin ChEBI	yes
[Ref.: #65580]	streptomycin ChEBI	yes
[Ref.: #65580]	tetracycline ChEBI	yes
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #65580]	acetoin ChEBI	no
[Ref.: #65580]	hydrogen sulfide ChEBI	no
[Ref.: #65580]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #65580]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #65580]	acid phosphatase	-	3.1.3.2
[Ref.: #65580]	alkaline phosphatase	-	3.1.3.1
[Ref.: #65580]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65580]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65580]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65580]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65580]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65580]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65580]	beta-galactosidase	+	3.2.1.23
[Ref.: #65580]	beta-galactosidase	-	3.2.1.23
[Ref.: #65580]	beta-glucosidase	-	3.2.1.21
[Ref.: #65580]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65580]	cystine arylamidase	+	3.4.11.3
[Ref.: #65580]	esterase (C 4)	-
[Ref.: #65580]	esterase Lipase (C 8)	-
[Ref.: #65580]	leucine arylamidase	-	3.4.11.1
[Ref.: #65580]	lipase (C 14)	-
[Ref.: #65580]	lysine decarboxylase	-	4.1.1.18
[Ref.: #65580]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65580]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65580]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #65580]	trypsin	+	3.4.21.4
[Ref.: #65580]	tryptophan deaminase	+	4.1.99.1
[Ref.: #65580]	urease	-	3.5.1.5
[Ref.: #65580]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65580]

Fatty acid	Percentage
C15:0 anteiso	48.5
C16:0	19.9
C16:0 iso	9.9
C17:1 iso I /C17:1 anteiso B	5
C15:0 iso	3.3
C14:0 iso	3.1
C17:0 anteiso	2.7
C14:0	2.1
C16:1ω11c	2
iso-C17:1ω11c	2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65580]	Sample type/isolated from	farmland soil
[Ref.: #65580]	Geographic location (country and/or sea, region)	Yancheng City, Jiangsu Province
[Ref.: #65580]	Country	China
[Ref.: #65580]	Country ISO 3 Code	CHN
[Ref.: #65580]	Continent	Asia
[Ref.: #65580]	Geographic location	34.1505°/120.0880°
[Ref.: #65580]	Enrichment culture	alkaline LB
[Ref.: #65580]	Enrichment culture composition	10 g NaCl, 5 g yeast extract powder, 10 g peptone, 15 g agar; pH 10.0
[Ref.: #65580]	Enrichment culture duration	3 days
[Ref.: #65580]	Enrichment culture temperature	30 ̊C
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Field

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65580]	Paenibacillus yanchengensis strain J-3 16S ribosomal RNA gene, partial sequence	MF947712		GenBank ENA

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GC-content

41.2 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

KCTC 33926, CGMCC 1.16455

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus yanchengensis sp. nov., isolated from farmland soil.	Lu LY, Chen LL, Xing ZY, Hu T, Lu JS, Huang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.002763	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65580

Lu-yao Lu, Ling-ling Chen, Zi-yu Xing, Ting Hu, Jia-sen Lu and Xing Huang: Paenibacillus yanchengensis sp. nov., isolated from farmland soil. IJSEM 68: 1902 - 1906 2018 ( DOI 10.1099/ijsem.0.002763 , PubMed 29664363 )

* These data were automatically processed and therefore are not curated

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