Paenibacillus yanchengensis (KCTC 33926, CGMCC 1.16455, J-3)

Name: Paenibacillus yanchengensis (KCTC 33926, CGMCC 1.16455, J-3)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158816

Type strain

Strain Designation J-3

Culture col. no. KCTC 33926 CGMCC 1.16455 J-3

NCBI tax ID(s) 2035833

Special Collections KCTC Literature strains

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Paenibacillus yanchengensis J-3 is an obligate aerobe, spore-forming, Gram-negative prokaryote that forms circular colonies and was isolated from farmland soil.

spore-forming Gram-negative motile rod-shaped colony-forming obligate aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 286505

KCTC 33926

@ref 20215

Last LPSN update 2026-02-09 11:38:25

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus yanchengensis

Full scientific name Paenibacillus yanchengensis Lu et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
65580	negative	2.3-4.8 µm	0.8-1.1 µm	rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
65580	1.0-2.0 mm	cream	circular	2 days	TSA

Culture and growth conditions

Culture medium

@ref	Name	Growth
65580	LB (Luria-Bertani) MEDIUM
65580	Reasoner's 2A agar (R2A)
65580	NH4-YE
65580	Trypticase Soy Agar (TSA)
65580	MacConkey

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
65580	positive	growth	15-42
65580	positive	optimum	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
65580	positive	optimum	7.0-8.0
65580	positive	growth	5.0-10.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

65580

Oxygen toleranceobligate aerobe

Spore formation

65580

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65580	NaCl	positive	growth	0-6 %(w/v)
65580	NaCl	positive	optimum	0.5 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65580	16651 ChEBI	(S)-lactate	-	carbon source
65580	64552 ChEBI	2-hydroxybutyrate	-	carbon source
65580	16763 ChEBI	2-oxobutanoate	-	carbon source
65580	30916 ChEBI	2-oxoglutarate	-	carbon source
65580	73918 ChEBI	3-O-methyl-D-glucose	-	carbon source
65580	18101 ChEBI	4-hydroxyphenylacetic acid	-	carbon source
65580	355715 ChEBI	4-nitrophenyl beta-D-galactopyranoside	+	assimilation
65580	30089 ChEBI	acetate	+/-	carbon source
65580	13705 ChEBI	acetoacetate	+/-	carbon source
65580	17128 ChEBI	adipate	-	assimilation
65580	27613 ChEBI	amygdalin	+	assimilation
65580	27613 ChEBI	amygdalin	+	builds acid from
65580	18305 ChEBI	arbutin	-	builds acid from
65580	8295 ChEBI	beta-hydroxybutyrate	-	carbon source
65580	73706 ChEBI	bromosuccinate	-	carbon source
65580	17057 ChEBI	cellobiose	-	builds acid from
65580	16947 ChEBI	citrate	-	carbon source
65580	16947 ChEBI	citrate	+	assimilation
65580	17108 ChEBI	D-arabinose	+	builds acid from
65580	18333 ChEBI	D-arabitol	-	builds acid from
65580	18333 ChEBI	D-arabitol	-	carbon source
65580	29990 ChEBI	D-aspartate	-	carbon source
65580	15824 ChEBI	D-fructose	+/-	carbon source
65580	78697 ChEBI	D-fructose 6-phosphate	+/-	carbon source
65580	28847 ChEBI	D-fucose	-	builds acid from
65580	28847 ChEBI	D-fucose	+/-	carbon source
65580	12936 ChEBI	D-galactose	+	carbon source
65580	18024 ChEBI	D-galacturonic acid	+/-	carbon source
65580	8391 ChEBI	D-gluconate	-	carbon source
65580	17634 ChEBI	D-glucose	-	assimilation
65580	17634 ChEBI	D-glucose	+	assimilation
65580	14314 ChEBI	D-glucose 6-phosphate	+/-	carbon source
65580	62318 ChEBI	D-lyxose	-	builds acid from
65580	15588 ChEBI	D-malate	-	carbon source
65580	16899 ChEBI	D-mannitol	-	assimilation
65580	16899 ChEBI	D-mannitol	-	carbon source
65580	16899 ChEBI	D-mannitol	+	assimilation
65580	16024 ChEBI	D-mannose	-	assimilation
65580	16024 ChEBI	D-mannose	-	carbon source
65580	33801 ChEBI	D-saccharate	-	carbon source
65580	16523 ChEBI	D-serine	-	carbon source
65580	17924 ChEBI	D-sorbitol	-	assimilation
65580	17924 ChEBI	D-sorbitol	-	builds acid from
65580	17924 ChEBI	D-sorbitol	-	carbon source
65580	16443 ChEBI	D-tagatose	-	builds acid from
65580	65327 ChEBI	D-xylose	+	builds acid from
65580	27689 ChEBI	decanoate	-	assimilation
65580	23652 ChEBI	dextrin	+/-	carbon source
65580	17113 ChEBI	erythritol	-	builds acid from
65580	4853 ChEBI	esculin	+	builds acid from
65580		esculin ferric citrate	+	assimilation
65580	15740 ChEBI	formate	-	carbon source
65580	28757 ChEBI	fructose	+	builds acid from
65580	16537 ChEBI	galactarate	-	carbon source
65580	16813 ChEBI	galactitol	-	builds acid from
65580	28260 ChEBI	galactose	+	builds acid from
65580	16865 ChEBI	gamma-aminobutyric acid	-	carbon source
65580	5291 ChEBI	gelatin	-	assimilation
65580	5291 ChEBI	gelatin	-	carbon source
65580	5291 ChEBI	gelatin	-	hydrolysis
65580	28066 ChEBI	gentiobiose	+	builds acid from
65580	28066 ChEBI	gentiobiose	+	carbon source
65580	17234 ChEBI	glucose	+	builds acid from
65580	17754 ChEBI	glycerol	-	builds acid from
65580	17754 ChEBI	glycerol	-	carbon source
65580	70744 ChEBI	glycine-proline	-	carbon source
65580	28087 ChEBI	glycogen	-	builds acid from
65580	17596 ChEBI	inosine	-	carbon source
65580	15443 ChEBI	inulin	-	builds acid from
65580	16977 ChEBI	L-alanine	-	carbon source
65580	30849 ChEBI	L-arabinose	-	assimilation
65580	30849 ChEBI	L-arabinose	+	assimilation
65580	30849 ChEBI	L-arabinose	+	builds acid from
65580	18403 ChEBI	L-arabitol	-	builds acid from
65580	16467 ChEBI	L-arginine	-	assimilation
65580	16467 ChEBI	L-arginine	+/-	carbon source
65580	29991 ChEBI	L-aspartate	-	carbon source
65580	18287 ChEBI	L-fucose	+	builds acid from
65580	18287 ChEBI	L-fucose	+/-	carbon source
65580	17464 ChEBI	L-galactonic acid gamma-lactone	+/-	carbon source
65580	29985 ChEBI	L-glutamate	-	carbon source
65580	15971 ChEBI	L-histidine	-	carbon source
65580	15589 ChEBI	L-malate	-	carbon source
65580	18183 ChEBI	L-pyroglutamic acid	-	carbon source
65580	62345 ChEBI	L-rhamnose	+	assimilation
65580	62345 ChEBI	L-rhamnose	+/-	carbon source
65580	17115 ChEBI	L-serine	-	carbon source
65580	16828 ChEBI	L-tryptophan	-	assimilation
65580	65328 ChEBI	L-xylose	-	builds acid from
65580	17716 ChEBI	lactose	+	builds acid from
65580	17716 ChEBI	lactose	+	carbon source
65580	25115 ChEBI	malate	+	assimilation
65580	17306 ChEBI	maltose	+	assimilation
65580	17306 ChEBI	maltose	+	builds acid from
65580	17306 ChEBI	maltose	+	carbon source
65580	29864 ChEBI	mannitol	-	builds acid from
65580	37684 ChEBI	mannose	+	builds acid from
65580	6731 ChEBI	melezitose	-	builds acid from
65580	28053 ChEBI	melibiose	+	assimilation
65580	28053 ChEBI	melibiose	+	builds acid from
65580	28053 ChEBI	melibiose	+	carbon source
65580	74611 ChEBI	methyl (R)-lactate	-	carbon source
65580	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from
65580	43943 ChEBI	methyl alpha-D-mannoside	+	builds acid from
65580	320055 ChEBI	methyl beta-D-glucopyranoside	-	carbon source
65580	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
65580	51850 ChEBI	methyl pyruvate	-	carbon source
65580	17268 ChEBI	myo-inositol	-	assimilation
65580	17268 ChEBI	myo-inositol	-	builds acid from
65580	17268 ChEBI	myo-inositol	-	carbon source
65580	63153 ChEBI	N-acetyl-D-mannosamine	-	carbon source
65580	28037 ChEBI	N-acetylgalactosamine	-	carbon source
65580	506227 ChEBI	N-acetylglucosamine	-	assimilation
65580	506227 ChEBI	N-acetylglucosamine	-	carbon source
65580	506227 ChEBI	N-acetylglucosamine	+	builds acid from
65580	17309 ChEBI	pectin	+	carbon source
65580	18401 ChEBI	phenylacetate	-	assimilation
65580		potassium 2-dehydro-D-gluconate	-	builds acid from
65580		potassium 5-dehydro-D-gluconate	-	builds acid from
65580	32032 ChEBI	potassium gluconate	-	assimilation
65580	32032 ChEBI	potassium gluconate	-	builds acid from
65580	63043 ChEBI	potassium nitrate	-	assimilation
65580	17272 ChEBI	propionate	-	carbon source
65580	26490 ChEBI	quinate	-	carbon source
65580	16634 ChEBI	raffinose	+	builds acid from
65580	26546 ChEBI	rhamnose	+	builds acid from
65580	15963 ChEBI	ribitol	-	builds acid from
65580	17814 ChEBI	salicin	-	carbon source
65580	17814 ChEBI	salicin	+	builds acid from
65580	53258 ChEBI	sodium citrate	-	assimilation
65580	27922 ChEBI	sorbose	-	builds acid from
65580	28017 ChEBI	starch	-	builds acid from
65580	17992 ChEBI	sucrose	+	assimilation
65580	17992 ChEBI	sucrose	+	builds acid from
65580	17992 ChEBI	sucrose	+	carbon source
65580	27082 ChEBI	trehalose	+	builds acid from
65580	27082 ChEBI	trehalose	+	carbon source
65580	32528 ChEBI	turanose	+	builds acid from
65580	32528 ChEBI	turanose	+	carbon source
65580	53423 ChEBI	tween 40	-	carbon source
65580	16199 ChEBI	urea	-	assimilation
65580	17151 ChEBI	xylitol	-	builds acid from

Antibiotic resistance

@ref	ChEBI	Metabolite
65580	2637	amikacin
65580	28971	ampicillin
65580	28669	bacitracin
65580	124991	cefalotin
65580	474053	cefazolin
65580	3547	cephradine
65580	17698	chloramphenicol
65580	100241	ciprofloxacin
65580	48923	erythromycin
65580	17833	gentamicin
65580	6472	lincomycin
65580	7507	neomycin
65580	28368	novobiocin
65580	7731	ofloxacin
65580	17334	penicillin
65580	59062	polymyxin
65580	28077	rifampicin
65580	9215	spectinomycin
65580	17076	streptomycin
65580	27902	tetracycline

Metabolite production

@ref	Chebi-ID	Metabolite
65580	15688 ChEBI	acetoin
65580	16136 ChEBI	hydrogen sulfide
65580	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
65580	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
65580	acid phosphatase	-	3.1.3.2
65580	alkaline phosphatase	-	3.1.3.1
65580	alpha-chymotrypsin	-	3.4.21.1
65580	alpha-fucosidase	-	3.2.1.51
65580	alpha-galactosidase	-	3.2.1.22
65580	alpha-glucosidase	+	3.2.1.20
65580	alpha-mannosidase	-	3.2.1.24
65580	arginine dihydrolase	-	3.5.3.6
65580	beta-galactosidase	+	3.2.1.23
65580	beta-galactosidase	-	3.2.1.23
65580	beta-glucosidase	-	3.2.1.21
65580	beta-glucuronidase	-	3.2.1.31
65580	cystine arylamidase	+	3.4.11.3
65580	esterase (C 4)	-
65580	esterase Lipase (C 8)	-
65580	leucine arylamidase	-	3.4.11.1
65580	lipase (C 14)	-
65580	lysine decarboxylase	-	4.1.1.18
65580	N-acetyl-beta-glucosaminidase	-	3.2.1.52
65580	naphthol-AS-BI-phosphohydrolase	+
65580	ornithine decarboxylase	-	4.1.1.17
65580	trypsin	+	3.4.21.4
65580	tryptophan deaminase	+	4.1.99.1
65580	urease	-	3.5.1.5
65580	valine arylamidase	-

Fatty acid profile

Metadata FA analysis

@ref

65580

Fatty acid	Percentage
C15:0 anteiso	48.5
C16:0	19.9
C16:0 iso	9.9
C17:1 iso I /C17:1 anteiso B	5
C15:0 iso	3.3
C14:0 iso	3.1
C17:0 anteiso	2.7
C14:0	2.1
C16:1ω11c	2
iso-C17:1ω11c	2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Field

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature
65580	farmland soil	Yancheng City, Jiangsu Province	China	CHN	Asia	34.1505	120.088 34.1505/120.088	alkaline LB	10 g NaCl, 5 g yeast extract powder, 10 g peptone, 15 g agar; pH 10.0	3 days	30

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4268246v1 assembly for Paenibacillus yanchengensis CGMCC 1.16455	scaffold	GCA_042682465	2035833	65.33
124043	ASM4268484v1 assembly for Paenibacillus yanchengensis KCTC 33926	contig	GCA_042684845	2035833	64.33

16S sequences

@ref	Description	Accession	Database
65580	Paenibacillus yanchengensis strain J-3 16S ribosomal RNA gene, partial sequence	MF947712

GC content

@ref	GC-content (mol%)	Method
65580	41.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus yanchengensis sp. nov., isolated from farmland soil.	Lu LY, Chen LL, Xing ZY, Hu T, Lu JS, Huang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.002763	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65580	Lu-yao Lu, Ling-ling Chen, Zi-yu Xing, Ting Hu, Jia-sen Lu and Xing Huang: Paenibacillus yanchengensis sp. nov., isolated from farmland soil. IJSEM 68: 1902 - 1906 2018 ( DOI 10.1099/ijsem.0.002763 , PubMed 29664363 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paenibacillus yanchengensis (KCTC 33926, CGMCC 1.16455, J-3)

Name and taxonomic classification