Acidimangrovimonas pyrenivorans (CICC 24263, KCTC 62192, PrR001)

Name: Acidimangrovimonas pyrenivorans (CICC 24263, KCTC 62192, PrR001)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158779

Type strain

Strain Designation PrR001

Culture col. no. CICC 24263 KCTC 62192 PrR001

NCBI tax ID(s) 2030798

Special Collections KCTC Literature strains

History <- Hui Wang/ Shuangfei Zhang, Shantiu Univ.

Links

Acidimangrovimonas pyrenivorans PrR001 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from marine river sediment of estuary.

Gram-negative rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 28092

KCTC 62192

@ref 20215

Last LPSN update 2026-02-09 11:38:25

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Paracoccaceae

Genus Acidimangrovimonas

Species Acidimangrovimonas pyrenivorans

Full scientific name Acidimangrovimonas pyrenivorans (Zhang et al. 2018) Ren et al. 2019

Synonyms (1)

Defluviimonas pyrenivorans

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
65533	negative	1.1-2.4 µm	0.5-1.0 µm	rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
65533	0.5-1.0 mm	cream	circular	2 days	LB agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
65533	LB (Luria-Bertani) MEDIUM
65533	mineral salt medium

Culture temp

@ref	Growth	Type	Temperature (°C)
65533	positive	growth	10-40
65533	positive	optimum	30
67771	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
65533	positive	optimum	7.0
65533	positive	growth	6.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
65533	aerobe
67771	aerobe

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
65533		NaCl	positive	growth	0.5-7.0 %
65533	moderately halophilic	NaCl	positive	optimum	5.0 %

Observation

65533

Observationdegradation of polycyclic aromatic hydrocarbons

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65533	30916 ChEBI	2-oxoglutarate	+	respiration
65533	16724 ChEBI	4-hydroxybutyrate	+	respiration
65533	30089 ChEBI	acetate	+	respiration
65533	17128 ChEBI	adipate	+	hydrolysis
65533	8295 ChEBI	beta-hydroxybutyrate	+	respiration
65533	15824 ChEBI	D-fructose	+	respiration
65533	17634 ChEBI	D-glucose	+	hydrolysis
65533	17634 ChEBI	D-glucose	+	respiration
65533	16024 ChEBI	D-mannose	+	respiration
65533	23652 ChEBI	dextrin	+	respiration
65533	21217 ChEBI	L-alaninamide	+	respiration
65533	16977 ChEBI	L-alanine	+	respiration
65533	30849 ChEBI	L-arabinose	+	hydrolysis
65533	29985 ChEBI	L-glutamate	+	respiration
65533	17295 ChEBI	L-phenylalanine	+	respiration
65533	24996 ChEBI	lactate	+	respiration
65533	25115 ChEBI	malate	+	hydrolysis
65533	51850 ChEBI	methyl pyruvate	+	respiration
65533	75146 ChEBI	monomethyl succinate	+	respiration
65533	506227 ChEBI	N-acetylglucosamine	+	hydrolysis
65533	17632 ChEBI	nitrate	+	reduction
65533	39106 ChEBI	pyrene	+	degradation
65533	53258 ChEBI	sodium citrate	+	hydrolysis
65533	143136 ChEBI	succinamate	+	respiration
65533	30031 ChEBI	succinate	+	respiration
65533	17748 ChEBI	thymidine	+	respiration
65533	32528 ChEBI	turanose	+	respiration

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
65533	28971	ampicillin	10 µg (disc)
65533	3393	carbenicillin	100 µg (disc)
65533	3542	cephalothin	30 µg (disc)
65533	17698	chloramphenicol	30 µg (disc)
65533	3745	clindamycin	2 µg (disc)
65533	48923	erythromycin	15 µg (disc)
65533	6104	kanamycin	30 µg (disc)
65533	6472	lincomycin		5 µg (disc)
65533	100147	nalidixic acid	30 µg (disc)
65533	28368	novobiocin	30 µg (disc)
65533	7809	oxacillin	1 µg (disc)
65533	18208	penicillin g	10 Unit (disc)
65533	8309	polymyxin b	300 Unit (disc)
65533	17076	streptomycin	10 µg (disc)
65533	28001	vancomycin	30 µg (disc)

Enzymes

@ref	Value	Activity	Ec
65533	acid phosphatase	+	3.1.3.2
65533	alkaline phosphatase	+	3.1.3.1
65533	alpha-chymotrypsin	-	3.4.21.1
65533	alpha-fucosidase	-	3.2.1.51
65533	alpha-glucosidase	+	3.2.1.20
65533	alpha-glucosidase	-	3.2.1.20
65533	alpha-mannosidase	-	3.2.1.24
65533	beta-galactosidase	-	3.2.1.23
65533	beta-glucosidase	-	3.2.1.21
65533	beta-glucuronidase	-	3.2.1.31
65533	cystine aminopeptidase	+	3.4.11.3
65533	cytochrome oxidase	+	1.9.3.1
65533	esterase (C 4)	+
65533	esterase Lipase (C 8)	+
65533	leucine aminopeptidase	+	3.4.1.1
65533	lipase (C 14)	+
65533	N-acetyl-beta-glucosaminidase	-	3.2.1.52
65533	naphthol-AS-BI-phosphohydrolase	-
65533	trypsin	-	3.4.21.4
65533	valine aminopeptidase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Estuary
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#River (Creek)
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
65533	marine river sediment of estuary	2016-08-17	Pearl River, Guangdong	China	CHN	Asia	22.1221	113.715 22.1221/113.715	Mineral salt medium	10 g of sediment were added into 100 ml of mineral salt medium with additional 100 mg/l pyrene	30 days	25	100 µl of diluted broth was spread onto mineral salt medium agar plates with additional 100 mg/l pyrene. Incubation at 25 °C for 3 days. Morphological different bacterial single colonies were picked and streaked on mineral salt agar plates with addition of pyrene for three repeated times.
67771	From sediment collected from the estuary of the Pearl River		Guangdong	China	CHN	Asia	22.1221	113.715 22.1221/113.715

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4264324v1 assembly for Acidimangrovimonas pyrenivorans KCTC 62192	contig	GCA_042643245	2030798	70.67

16S sequences

@ref	Description	Accession	Database
65533	Acidimangrovimonas pyrenivorans strain PrR001 16S ribosomal RNA gene, partial sequence	MF774691

GC content

@ref	GC-content (mol%)	Method
65533	68.3	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Acidimangrovimonas sediminis gen. nov., sp. nov., isolated from mangrove sediment and reclassification of Defluviimonas indica as Acidimangrovimonas indica comb. nov. and Defluviimonas pyrenivorans as Acidimangrovimonas pyrenivorans comb. nov.	Ren H, Ma H, Li H, Huang L, Luo Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.003513	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65533	Shuangfei Zhang, Chongran Sun, Jinli Xie, Huan Wei, Zhong Hu and Hui Wang: Defluviimonas pyrenivorans sp. nov., a novel bacterium capable of degrading polycyclic aromatic hydrocarbons. IJSEM 68: 957 - 961 2018 ( DOI 10.1099/ijsem.0.002629 , PubMed 29458487 )
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Acidimangrovimonas pyrenivorans (CICC 24263, KCTC 62192, PrR001)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_042643245

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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