Name: Acidimangrovimonas pyrenivorans PrR001
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158779

Type strain:

Species: Acidimangrovimonas pyrenivorans

Strain Designation: PrR001

Culture col. no.: CICC 24263, KCTC 62192

Strain history: <- Hui Wang/ Shuangfei Zhang, Shantiu Univ.

NCBI tax ID(s): 2030798 (species)

Section

Acidimangrovimonas pyrenivorans PrR001 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from marine river sediment of estuary.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	Rhodobacteraceae
	Genus	*Acidimangrovimonas*
	Species	**Acidimangrovimonas pyrenivorans**
	Full Scientific Name (PNU)	Acidimangrovimonas pyrenivorans (Zhang et al. 2018) Ren et al. 2019

Synonym

Defluviimonas pyrenivorans

Information on morphological and physiological properties Morphology

[Ref.: #65533]	Gram stain	negative
[Ref.: #65533]	Cell length	1.1-2.4 µm
[Ref.: #65533]	Cell width	0.5-1.0 µm
[Ref.: #65533]	Cell shape	rod-shaped

[Ref.: #65533]	Colony size	0.5-1.0 mm
[Ref.: #65533]	Colony color	cream
[Ref.: #65533]	Colony shape	circular
[Ref.: #65533]	Incubation period	2 days
[Ref.: #65533]	Cultivation medium used	LB agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium

mineral salt medium

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Culture medium growth

		Temperature
[Ref.: #65533]	growth	10-40 °C
[Ref.: #65533]	optimum	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #65533]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65533]			optimum	7.0
[Ref.: #65533]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65533]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #65533]

Halophily / tolerance level

moderately halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65533]		NaCl		growth	0.5-7.0	%
[Ref.: #65533]		NaCl		optimum	5.0	%

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Observation

degradation of polycyclic aromatic hydrocarbons

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65533]	2-oxoglutarate ChEBI	+	respiration
[Ref.: #65533]	4-hydroxybutyrate ChEBI	+	respiration
[Ref.: #65533]	acetate ChEBI	+	respiration
[Ref.: #65533]	adipate ChEBI	+	hydrolysis
[Ref.: #65533]	beta-hydroxybutyrate ChEBI	+	respiration
[Ref.: #65533]	D-fructose ChEBI	+	respiration
[Ref.: #65533]	D-glucose ChEBI	+	hydrolysis
[Ref.: #65533]	D-glucose ChEBI	+	respiration
[Ref.: #65533]	D-mannose ChEBI	+	respiration
[Ref.: #65533]	dextrin ChEBI	+	respiration
[Ref.: #65533]	L-alaninamide ChEBI	+	respiration
[Ref.: #65533]	L-alanine ChEBI	+	respiration
[Ref.: #65533]	L-arabinose ChEBI	+	hydrolysis
[Ref.: #65533]	L-glutamate ChEBI	+	respiration
[Ref.: #65533]	L-phenylalanine ChEBI	+	respiration
[Ref.: #65533]	lactate ChEBI	+	respiration
[Ref.: #65533]	malate ChEBI	+	hydrolysis
[Ref.: #65533]	methyl pyruvate ChEBI	+	respiration
[Ref.: #65533]	monomethyl succinate ChEBI	+	respiration
[Ref.: #65533]	N-acetylglucosamine ChEBI	+	hydrolysis
[Ref.: #65533]	nitrate ChEBI	+	reduction
[Ref.: #65533]	pyrene ChEBI	+	degradation
[Ref.: #65533]	sodium citrate ChEBI	+	hydrolysis
[Ref.: #65533]	succinamate ChEBI	+	respiration
[Ref.: #65533]	succinate ChEBI	+	respiration
[Ref.: #65533]	thymidine ChEBI	+	respiration
[Ref.: #65533]	turanose ChEBI	+	respiration
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #65533]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #65533]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #65533]	cephalothin ChEBI	yes	30	µg (disc)
[Ref.: #65533]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #65533]	clindamycin ChEBI	yes	2	µg (disc)
[Ref.: #65533]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #65533]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #65533]	lincomycin ChEBI				yes	5	µg (disc)
[Ref.: #65533]	nalidixic acid ChEBI	yes	30	µg (disc)
[Ref.: #65533]	novobiocin ChEBI	yes	30	µg (disc)
[Ref.: #65533]	oxacillin ChEBI	yes	1	µg (disc)
[Ref.: #65533]	penicillin g ChEBI	yes	10	Unit (disc)
[Ref.: #65533]	polymyxin b ChEBI	yes	300	Unit (disc)
[Ref.: #65533]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #65533]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #65533]	acid phosphatase	+	3.1.3.2
[Ref.: #65533]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65533]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65533]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65533]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65533]	alpha-glucosidase	-	3.2.1.20
[Ref.: #65533]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65533]	beta-galactosidase	-	3.2.1.23
[Ref.: #65533]	beta-glucosidase	-	3.2.1.21
[Ref.: #65533]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65533]	cystine aminopeptidase	+	3.4.11.3
[Ref.: #65533]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65533]	esterase (C 4)	+
[Ref.: #65533]	esterase Lipase (C 8)	+
[Ref.: #65533]	leucine aminopeptidase	+	3.4.1.1
[Ref.: #65533]	lipase (C 14)	+
[Ref.: #65533]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65533]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #65533]	trypsin	-	3.4.21.4
[Ref.: #65533]	valine aminopeptidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65533]	Sample type/isolated from	marine river sediment of estuary
[Ref.: #65533]	Sampling date	2016-08-17
[Ref.: #65533]	Geographic location (country and/or sea, region)	Pearl River, Guangdong
[Ref.: #65533]	Country	China
[Ref.: #65533]	Country ISO 3 Code	CHN
[Ref.: #65533]	Continent	Asia
[Ref.: #65533]	Geographic location	22.1221°/113.7150°
[Ref.: #65533]	Enrichment culture	Mineral salt medium
[Ref.: #65533]	Enrichment culture composition	10 g of sediment were added into 100 ml of mineral salt medium with additional 100 mg/l pyrene
[Ref.: #65533]	Enrichment culture duration	30 days
[Ref.: #65533]	Enrichment culture temperature	25 ̊C
[Ref.: #65533]	Isolation/enrichment procedure	100 µl of diluted broth was spread onto mineral salt medium agar plates with additional 100 mg/l pyrene. Incubation at 25 °C for 3 days. Morphological different bacterial single colonies were picked and streaked on mineral salt agar plates with addition of pyrene for three repeated times.

[Ref.: #67771]	Sample type/isolated from	From sediment collected from the estuary of the Pearl River
[Ref.: #67771]	Geographic location (country and/or sea, region)	Guangdong
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	22.1221°/113.7150°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Estuary
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#River (Creek)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65533]	16S rRNA gene sequence	MF774691		GenBank

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GC-content

68.3 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #65533]

Culture collection no.

CICC 24263, KCTC 62192

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Acidimangrovimonas sediminis gen. nov., sp. nov., isolated from mangrove sediment and reclassification of Defluviimonas indica as Acidimangrovimonas indica comb. nov. and Defluviimonas pyrenivorans as Acidimangrovimonas pyrenivorans comb. nov.	Ren H, Ma H, Li H, Huang L, Luo Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.003513	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65533

Shuangfei Zhang, Chongran Sun, Jinli Xie, Huan Wei, Zhong Hu and Hui Wang: Defluviimonas pyrenivorans sp. nov., a novel bacterium capable of degrading polycyclic aromatic hydrocarbons. IJSEM 68: 957 - 961 2018 ( DOI 10.1099/ijsem.0.002629 , PubMed 29458487 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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