Name: Paenibacillus shunpengii YYJ7-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158769

Type strain:

Species: Paenibacillus shunpengii

Strain Designation: YYJ7-1

Culture col. no.: ACCC 19965, KCTC 33849

Strain history: <- Jian He, Nanjing Agricultural Univ.

NCBI tax ID(s): 2054424 (species)

Section

Paenibacillus shunpengii YYJ7-1 is an aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from farmland soil.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus shunpengii**
	Full Scientific Name (LPSN)	Paenibacillus shunpengii Yang et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65524]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #65524]	Cell length	0.8-1.2 µm

[Ref.: #65524]	Cell width	0.4-0.6 µm

[Ref.: #65524]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #65524]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #65524]	Colony size	5 mm
[Ref.: #65524]	Colony color	greyish
[Ref.: #65524]	Colony shape	circular
[Ref.: #65524]	Incubation period	1 day
[Ref.: #65524]	Cultivation medium used	LB

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65524]

Culture medium

LB (Luria-Bertani) MEDIUM

[Ref.: #65524]

Culture medium growth

		Temperature
[Ref.: #65524]	growth	18-42 °C
[Ref.: #65524]	optimum	35 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #65524]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65524]			optimum	7.5
[Ref.: #65524]			growth	6.5-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65524]	Oxygen tolerance	aerobe
[Ref.: #65524]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	facultative anaerobe

[Ref.: #65524]	Spore description	ellipsoidal endospores
[Ref.: #65524]	Ability of spore formation	yes
[Ref.: #67771]	Type of spore	endospore
[Ref.: #67771]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65524]		NaCl		growth	0.0-4.0	%(w/v)
[Ref.: #65524]		NaCl		optimum	0.5	%(w/v)

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65524]	adipate ChEBI	-	assimilation
[Ref.: #65524]	amygdalin ChEBI	+	builds acid from
[Ref.: #65524]	arbutin ChEBI	+	builds acid from
[Ref.: #65524]	cellobiose ChEBI	+	builds acid from
[Ref.: #65524]	D-arabinose ChEBI	-	builds acid from
[Ref.: #65524]	D-arabitol ChEBI	-	builds acid from
[Ref.: #65524]	D-fucose ChEBI	-	builds acid from
[Ref.: #65524]	D-glucose ChEBI	-	assimilation
[Ref.: #65524]	D-lyxose ChEBI	-	builds acid from
[Ref.: #65524]	D-mannitol ChEBI	+	assimilation
[Ref.: #65524]	D-mannose ChEBI	+	assimilation
[Ref.: #65524]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #65524]	D-tagatose ChEBI	-	builds acid from
[Ref.: #65524]	D-xylose ChEBI	+	builds acid from
[Ref.: #65524]	decanoate ChEBI	-	assimilation
[Ref.: #65524]	erythritol ChEBI	-	builds acid from
[Ref.: #65524]	esculin ChEBI	+	builds acid from
[Ref.: #65524]	esculin ferric citrate	+	hydrolysis
[Ref.: #65524]	fructose ChEBI	+	builds acid from
[Ref.: #65524]	galactitol ChEBI	-	builds acid from
[Ref.: #65524]	galactose ChEBI	-	builds acid from
[Ref.: #65524]	gelatin ChEBI	+	hydrolysis
[Ref.: #65524]	gentiobiose ChEBI	-	builds acid from
[Ref.: #65524]	glucose ChEBI	-	builds acid from
[Ref.: #65524]	glycerol ChEBI	-	builds acid from
[Ref.: #65524]	glycogen ChEBI	-	builds acid from
[Ref.: #65524]	inulin ChEBI	-	builds acid from
[Ref.: #65524]	L-arabinose ChEBI	+	assimilation
[Ref.: #65524]	L-arabinose ChEBI	+	builds acid from
[Ref.: #65524]	L-arabitol ChEBI	-	builds acid from
[Ref.: #65524]	L-fucose ChEBI	-	builds acid from
[Ref.: #65524]	L-xylose ChEBI	-	builds acid from
[Ref.: #65524]	lactose ChEBI	+	builds acid from
[Ref.: #65524]	malate ChEBI	-	assimilation
[Ref.: #65524]	maltose ChEBI	+	assimilation
[Ref.: #65524]	maltose ChEBI	+	builds acid from
[Ref.: #65524]	mannitol ChEBI	+	builds acid from
[Ref.: #65524]	mannose ChEBI	+	builds acid from
[Ref.: #65524]	melezitose ChEBI	-	builds acid from
[Ref.: #65524]	melibiose ChEBI	+	builds acid from
[Ref.: #65524]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #65524]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #65524]	myo-inositol ChEBI	-	builds acid from
[Ref.: #65524]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #65524]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #65524]	nitrate ChEBI	-	reduction
[Ref.: #65524]	phenylacetate ChEBI	-	assimilation
[Ref.: #65524]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #65524]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #65524]	potassium gluconate ChEBI	+	assimilation
[Ref.: #65524]	potassium gluconate ChEBI	+	builds acid from
[Ref.: #65524]	raffinose ChEBI	-	builds acid from
[Ref.: #65524]	rhamnose ChEBI	-	builds acid from
[Ref.: #65524]	ribitol ChEBI	-	builds acid from
[Ref.: #65524]	ribose ChEBI	+	builds acid from
[Ref.: #65524]	salicin ChEBI	+	builds acid from
[Ref.: #65524]	sodium citrate ChEBI	-	assimilation
[Ref.: #65524]	sorbose ChEBI	-	builds acid from
[Ref.: #65524]	starch ChEBI	+	builds acid from
[Ref.: #65524]	sucrose ChEBI	-	builds acid from
[Ref.: #65524]	trehalose ChEBI	-	builds acid from
[Ref.: #65524]	turanose ChEBI	-	builds acid from
[Ref.: #65524]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #65524]	bacitracin ChEBI				yes	40	µg (disc)
[Ref.: #65524]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #65524]	erythromycin ChEBI	yes	10	µg (disc)
[Ref.: #65524]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #65524]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #65524]	lincomycin ChEBI				yes	2	µg (disc)
[Ref.: #65524]	nalidixic acid ChEBI				yes	30	µg (disc)
[Ref.: #65524]	neomycin ChEBI	yes	30	µg (disc)
[Ref.: #65524]	novobiocin ChEBI				yes	30	µg (disc)
[Ref.: #65524]	penicillin ChEBI	yes	100	µg (disc)
[Ref.: #65524]	polymyxin b ChEBI				yes	300	µg (disc)
[Ref.: #65524]	rifampicin ChEBI				yes	10	µg (disc)
[Ref.: #65524]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #65524]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #65524]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65524]		acetoin ChEBI	no
[Ref.: #65524]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #65524]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #65524]	acid phosphatase	-	3.1.3.2
[Ref.: #65524]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65524]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65524]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65524]	alpha-glucosidase	-	3.2.1.20
[Ref.: #65524]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65524]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65524]	beta-galactosidase	+	3.2.1.23
[Ref.: #65524]	beta-galactosidase	-	3.2.1.23
[Ref.: #65524]	beta-glucosidase	-	3.2.1.21
[Ref.: #65524]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65524]	cystine arylamidase	+	3.4.11.3
[Ref.: #65524]	esterase (C 4)	-
[Ref.: #65524]	esterase Lipase (C 8)	-
[Ref.: #65524]	leucine arylamidase	-	3.4.11.1
[Ref.: #65524]	lipase (C 14)	-
[Ref.: #65524]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65524]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #65524]	trypsin	-	3.4.21.4
[Ref.: #65524]	urease	-	3.5.1.5
[Ref.: #65524]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65524]

Fatty acid	Percentage
C15:0 anteiso	45.2
C16:0 iso	15.8
C17:0 anteiso	11.6
C16:0	6.7
C15:0 iso	3.4
C17:0 iso	3.4
C14:0 iso	3
C18:0	1.8
C17:0	1.6
C18:1ω9c	0.7
C16:1ω11c	0.6
C14:0	0.5
C12:0	0.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65524]	Sample type/isolated from	farmland soil
[Ref.: #65524]	Geographic location (country and/or sea, region)	Wenzhou, Zhejiang Province
[Ref.: #65524]	Country	China
[Ref.: #65524]	Country ISO 3 Code	CHN
[Ref.: #65524]	Continent	Asia
[Ref.: #65524]	Geographic location	27.8833°/120.6000°
[Ref.: #65524]	Enrichment culture	LB

[Ref.: #67771]	Sample type/isolated from	From farmland soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Wenzhou, Zhejiang Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	27.8833°/120.6000°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Field

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KX900571 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	471
Soil Samples	1804
Animal Samples	1869
Plant Samples	1590
Total Samples	5734

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65524]	16S rRNA gene sequence	KX900571		GenBank

[Ref.: #65524]	GC-content	39.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	39.4 mol%

Availability in culture collections External links

[Ref.: #65524]

Culture collection no.

ACCC 19965, KCTC 33849

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus shunpengii sp. nov., isolated from farmland soil.	Yang YJ, Zhang YT, Chen GQ, Cheng D, Qiu JG, He Q, He J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002484	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65524

You-Jian Yang, Yan-Ting Zhang, Guo-Qiang Chen, Dan Cheng, Ji-Guo Qiu, Qin He and Jian He: Paenibacillus shunpengii sp. nov., isolated from farmland soil. IJSEM 68: 211 - 216 2018 ( DOI 10.1099/ijsem.0.002484 , PubMed 29134934 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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