Name: Lonsdalea iberica R-44166
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158750

Type strain:

Species: Lonsdalea iberica

Strain Designation: R-44166

Culture col. no.: LMG 26264, NCPPB 4490, CFCC 10824

NCBI tax ID(s): 1082703 (species)

SI-ID 377647

LMG 26264, NCPPB 4490

Section

Lonsdalea iberica R-44166 is a facultative anaerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from Mediterranean oak.

colony-forming
Gram-negative
motile
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Pectobacteriaceae*
	Genus	*Lonsdalea*
	Species	**Lonsdalea iberica**
	Full Scientific Name (LPSN)	Lonsdalea iberica (Brady et al. 2012) Li et al. 2017

Synonym

Lonsdalea quercina subsp. iberica

Information on morphological and physiological properties Morphology

[Ref.: #65502]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.962

[Ref.: #65502]	Cell length	1.5-2.0 µm

[Ref.: #65502]	Cell width	0.7-0.9 µm

[Ref.: #65502]	Cell shape	rod-shaped

[Ref.: #65502]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %98.812

[Ref.: #65502]	Flagellum arrangement	peritrichous

[Ref.: #65502]	Colony color	white-cream
[Ref.: #65502]	Colony shape	circular
[Ref.: #65502]	Cultivation medium used	TSA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65502]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #65502]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #65502]			optimum	28-30 °C

[Ref.: #65502]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65502]

Oxygen tolerance

facultative anaerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.973
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65502]	2-oxoglutarate ChEBI	+	carbon source
[Ref.: #65502]	arbutin ChEBI	+	builds acid from
[Ref.: #65502]	bromosuccinate ChEBI	+	carbon source
[Ref.: #65502]	citrate ChEBI	+	carbon source
[Ref.: #65502]	D-fructose ChEBI	+	builds acid from
[Ref.: #65502]	D-fructose ChEBI	+	carbon source
[Ref.: #65502]	D-galactose ChEBI	+	builds acid from
[Ref.: #65502]	D-galactose ChEBI	+	carbon source
[Ref.: #65502]	D-gluconate ChEBI	+	carbon source
[Ref.: #65502]	D-glucose ChEBI	+	builds acid from
[Ref.: #65502]	D-glucose ChEBI	+	carbon source
[Ref.: #65502]	D-glucose 6-phosphate ChEBI	+	carbon source
[Ref.: #65502]	D-mannitol ChEBI	+	builds acid from
[Ref.: #65502]	D-mannitol ChEBI	+	carbon source
[Ref.: #65502]	D-mannose ChEBI	+	builds acid from
[Ref.: #65502]	D-mannose ChEBI	+	carbon source
[Ref.: #65502]	D-psicose ChEBI	+	carbon source
[Ref.: #65502]	D-ribose ChEBI	+	builds acid from
[Ref.: #65502]	esculin ferric citrate	+	builds acid from
[Ref.: #65502]	formate ChEBI	+	carbon source
[Ref.: #65502]	glycerol ChEBI	+	builds acid from
[Ref.: #65502]	glycerol ChEBI	+	carbon source
[Ref.: #65502]	L-aspartate ChEBI	+	carbon source
[Ref.: #65502]	L-glutamate ChEBI	-	carbon source
[Ref.: #65502]	L-histidine ChEBI	-	carbon source
[Ref.: #65502]	L-leucine ChEBI	-	carbon source
[Ref.: #65502]	L-phenylalanine ChEBI	-	carbon source
[Ref.: #65502]	L-threonine ChEBI	-	carbon source
[Ref.: #65502]	lactate ChEBI	+	carbon source
[Ref.: #65502]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #65502]	methyl beta-D-glucopyranoside ChEBI	+	carbon source
[Ref.: #65502]	methyl pyruvate ChEBI	-	carbon source
[Ref.: #65502]	monomethyl succinate ChEBI	-	carbon source
[Ref.: #65502]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #65502]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #65502]	nitrate ChEBI	-	reduction
[Ref.: #65502]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #65502]	raffinose ChEBI	-	builds acid from
[Ref.: #65502]	raffinose ChEBI	+	carbon source
[Ref.: #65502]	salicin ChEBI	+	builds acid from
[Ref.: #65502]	succinate ChEBI	+	carbon source
[Ref.: #65502]	sucrose ChEBI	+	builds acid from
[Ref.: #65502]	sucrose ChEBI	+	carbon source
[Ref.: #65502]	trehalose ChEBI	-	builds acid from
[Ref.: #65502]	trehalose ChEBI	+	carbon source
[Ref.: #65502]	turanose ChEBI	+	builds acid from
[Ref.: #65502]	turanose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #65502]	acetoin ChEBI	yes
[Ref.: #65502]	hydrogen sulfide ChEBI	no
[Ref.: #65502]	indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65502]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65502]	beta-galactosidase	-	3.2.1.23
[Ref.: #65502]	catalase	+	1.11.1.6
[Ref.: #65502]	cytochrome oxidase	-	1.9.3.1
[Ref.: #65502]	gelatinase	-
[Ref.: #65502]	lysine decarboxylase	-	4.1.1.18
[Ref.: #65502]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #65502]	tryptophan deaminase	-	4.1.99.1
[Ref.: #65502]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65502]	Sample type/isolated from	Mediterranean oak
[Ref.: #65502]	Country	Spain
[Ref.: #65502]	Country ISO 3 Code	ESP
[Ref.: #65502]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Tree

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65502]	16S rRNA gene sequence	LUTP00000000		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Lonsdalea iberica LMG 26264	GCA_002111585	contig	GenBank	1082703 tax ID	*
[Ref.: #66792]	Lonsdalea quercina subsp. iberica strain LMG 26264	1082703.3	wgs	PATRIC	1082703 tax ID	*
[Ref.: #66792]	Lonsdalea iberica LMG 26264	2849723134	draft	JGI IMG/M	1082703 tax ID	*

[Ref.: #65502]

GC-content

55 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lonsdalea quercina subsp. iberica strain LMG 26264 PATRIC: 1082703.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lonsdalea quercina subsp. iberica strain LMG 26264 PATRIC: 1082703.3
[Ref.: #69480]	motile	yes	90.468	yes
[Ref.: #69480]	flagellated	yes	73.388	yes
[Ref.: #69480]	gram-positive	no	97.761	no
[Ref.: #69480]	anaerobic	no	97.252	yes
[Ref.: #69480]	aerobic	no	55.552	yes
[Ref.: #69480]	halophile	no	82.361	no
[Ref.: #69480]	spore-forming	no	93.968	no
[Ref.: #69480]	thermophile	no	98.825	yes
[Ref.: #69480]	glucose-util	yes	87.996	no
[Ref.: #69480]	glucose-ferment	yes	87.439	no

Availability in culture collections External links

[Ref.: #65502]

Culture collection no.

LMG 26264, NCPPB 4490, CFCC 10824

[Ref.: #111336]

SI-ID 377647

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Elevation of three subspecies of Lonsdalea quercina to species level: Lonsdalea britannica sp. nov., Lonsdalea iberica sp. nov. and Lonsdalea populi sp. nov.	Li Y, Xue H, Guo LM, Koltay A, Palacio-Bielsa A, Chang J, Xie S, Yang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.002353	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65502

Yong Li, Han Xue, Li-min Guo, Andr as Koltay, Ana Palacio-Bielsa, Jupu Chang, Shoujiang Xie and Xuqi Yang: Elevation of three subspecies of Lonsdalea quercina to species level: Lonsdalea britannica sp. nov., Lonsdalea iberica sp. nov. and Lonsdalea populi sp. nov.. IJSEM 67: 4680 - 4684 2017 ( DOI 10.1099/ijsem.0.002353 , PubMed 28954646 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111336

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID377647.1 )

* These data were automatically processed and therefore are not curated

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Lonsdalea quercina subsp. iberica strain LMG 26264

Lonsdalea quercina subsp. iberica strain LMG 26264

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