Name: Polynucleobacter meluiroseus AP-Melu-1000-B4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158668

Type strain:

Species: Polynucleobacter meluiroseus

Strain Designation: AP-Melu-1000-B4

Culture col. no.: DSM 103591, CIP 111329

Strain history: CIP <- 2017, DSMZ <- A. Pitt, Innsbruck Univ., Innsbruck, Austria: strain AP-Melu-1000-B4

NCBI tax ID(s): 1938814 (species)

SI-ID 414031

CIP 111329

Section

Polynucleobacter meluiroseus AP-Melu-1000-B4 is an aerobe, chemoorganotroph, rod-shaped bacterium that forms circular colonies and was isolated from water sample at circa 0.2 m depth.

colony-forming
rod-shaped
aerobe
chemoorganotroph
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Polynucleobacter*
	Species	**Polynucleobacter meluiroseus**
	Full Scientific Name (LPSN)	Polynucleobacter meluiroseus Pitt et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #120890]	Gram stain	negative

[Ref.: #120890]	Cell shape	rod-shaped
[Ref.: #65397]	Cell shape	rod-shaped

[Ref.: #120890]	Motility	no

[Ref.: #65397]	Cell length	0.8-2.1 µm

[Ref.: #65397]	Cell width	0.3-0.6 µm

[Ref.: #65397]	Colony color	rose
[Ref.: #65397]	Colony shape	circular
[Ref.: #65397]	Cultivation medium used	nutrient broth soyatone yeast extract medium

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65397]

Culture medium

nutrient broth soyatone yeast extract medium

[Ref.: #65397]

Culture medium growth

[Ref.: #120890]

Culture medium

CIP Medium 566

[Ref.: #120890]

Culture medium growth

[Ref.: #120890]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #65397]			growth	5-28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65397]

Oxygen tolerance

aerobe

[Ref.: #65397]

Nutrition type

chemoorganotroph

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65397]		NaCl		growth	0-0.4	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65397]	4-oxopentanoate ChEBI	+	assimilation
[Ref.: #65397]	acetate ChEBI	+	assimilation
[Ref.: #65397]	betaine ChEBI	-	assimilation
[Ref.: #65397]	citrate ChEBI	-	assimilation
[Ref.: #65397]	D-fructose ChEBI	-	assimilation
[Ref.: #65397]	D-galactose ChEBI	-	assimilation
[Ref.: #65397]	D-galacturonic acid ChEBI	-	assimilation
[Ref.: #65397]	D-glucose ChEBI	-	assimilation
[Ref.: #65397]	D-lyxose ChEBI	-	assimilation
[Ref.: #65397]	D-mannose ChEBI	-	assimilation
[Ref.: #65397]	D-sorbitol ChEBI	+	assimilation
[Ref.: #65397]	fumarate ChEBI	+	assimilation
[Ref.: #65397]	glycolate ChEBI	-	assimilation
[Ref.: #65397]	glyoxylate ChEBI	-	assimilation
[Ref.: #65397]	L-alanine ChEBI	-	assimilation
[Ref.: #65397]	L-asparagine ChEBI	-	assimilation
[Ref.: #65397]	L-aspartate ChEBI	+	assimilation
[Ref.: #65397]	L-cysteine ChEBI	+	assimilation
[Ref.: #65397]	L-fucose ChEBI	-	assimilation
[Ref.: #65397]	L-glutamate ChEBI	+	assimilation
[Ref.: #65397]	L-histidine ChEBI	-	assimilation
[Ref.: #65397]	L-leucine ChEBI	-	assimilation
[Ref.: #65397]	L-serine ChEBI	-	assimilation
[Ref.: #65397]	malate ChEBI	+	assimilation
[Ref.: #65397]	malonate ChEBI	+	assimilation
[Ref.: #65397]	oxalate ChEBI	-	assimilation
[Ref.: #65397]	oxaloacetate ChEBI	+	assimilation
[Ref.: #65397]	propionate ChEBI	+	assimilation
[Ref.: #65397]	pyruvate ChEBI	+	assimilation
[Ref.: #65397]	succinate ChEBI	+	assimilation
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65397]	Sample type/isolated from	water sample at circa 0.2 m depth
[Ref.: #65397]	Sampling date	2015-07
[Ref.: #65397]	Geographic location (country and/or sea, region)	Lake Melu (Lac de Melu/Lac de Melo) a small lake located in the mountains (Restonica valley) of the Mediterranean island of Corsica
[Ref.: #65397]	Country	France
[Ref.: #65397]	Country ISO 3 Code	FRA
[Ref.: #65397]	Continent	Europe
[Ref.: #65397]	Geographic location	42.2130°/9.0230°
[Ref.: #65397]	Enrichment culture	nutrient broth soyatone yeast extract medium
[Ref.: #65397]	Isolation/enrichment procedure	filtration-acclimatization method

[Ref.: #120890]	Sample type/isolated from	Environment, Water, freshwater lake
[Ref.: #120890]	Geographic location (country and/or sea, region)	Lake of Melo, Corsica
[Ref.: #120890]	Country	France
[Ref.: #120890]	Country ISO 3 Code	FRA
[Ref.: #120890]	Continent	Europe
[Ref.: #120890]	Isolation date	2015-07-13
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #120890]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65397]	16S rRNA gene sequences	MF872602		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Polynucleobacter meluiroseus AP-Melu-1000-B4	GCA_900205755	contig	GenBank	1938814 tax ID	*
[Ref.: #66792]	Polynucleobacter meluiroseus AP-Melu-1000-B4	2710724120	draft	JGI IMG/M	1938814 tax ID	*

[Ref.: #65397]

GC-content

46.6 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #65397]

Culture collection no.

DSM 103591, CIP 111329

[Ref.: #111326]

SI-ID 414031

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Polynucleobacter meluiroseus sp. nov., a bacterium isolated from a lake located in the mountains of the Mediterranean island of Corsica.	Pitt A, Schmidt J, Lang E, Whitman WB, Woyke T, Hahn MW	Int J Syst Evol Microbiol	10.1099/ijsem.0.002777	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65397

Alexandra Pitt, Johanna Schmidt, Elke Lang, William B. Whitman, Tanja Woyke, Martin W. Hahn: Polynucleobacter meluiroseus sp. nov., a bacterium isolated from a lake located in the mountains of the Mediterranean island of Corsica. IJSEM 2018: 1975 - 1985 68 ( DOI 10.1099/ijsem.0.002777 , PubMed 29688164 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#111326

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID414031.1 )

#120890 Collection of Institut Pasteur ; Curators of the CIP; CIP 111329
* These data were automatically processed and therefore are not curated

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