Polynucleobacter meluiroseus (DSM 103591, CIP 111329, AP-Melu-1000-B4)

Name: Polynucleobacter meluiroseus (DSM 103591, CIP 111329, AP-Melu-1000-B4)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158668

Type strain

Strain Designation AP-Melu-1000-B4

Culture col. no. DSM 103591 CIP 111329 AP-Melu-1000-B4

NCBI tax ID(s) 1938814

Special Collections DSMZ CIP Literature strains

Links

Polynucleobacter meluiroseus AP-Melu-1000-B4 is an aerobe, chemoorganotroph, rod-shaped prokaryote that forms circular colonies and was isolated from water sample at circa 0.2 m depth.

rod-shaped colony-forming aerobe chemoorganotroph genome sequence 16S sequence

Name and taxonomic classification

SI-ID 414031

CIP 111329

@ref 20215

Last LPSN update 2025-12-16 10:08:04

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Polynucleobacter

Species Polynucleobacter meluiroseus

Full scientific name Polynucleobacter meluiroseus Pitt et al. 2018

Morphology

Cell morphology

@ref	Cell length	Cell width	Cell shape	Gram stain	Confidence
65397	0.8-2.1 µm	0.3-0.6 µm	rod-shaped
125439				negative	97.9
120890			rod-shaped	negative

Colony morphology

@ref	Colony color	Colony shape	Medium used
65397	rose	circular	nutrient broth soyatone yeast extract medium

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link
65397	nutrient broth soyatone yeast extract medium
120890	CIP Medium 566		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
65397	positive	growth	5-28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
65397	aerobe
125439	obligate aerobe	97.1

Nutrition type

65397

Typechemoorganotroph

Spore formation

@ref	Spore formation	Confidence
125439		98.1

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65397	NaCl	positive	growth	0-0.4 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65397	39150 ChEBI	4-oxopentanoate	+	assimilation
65397	30089 ChEBI	acetate	+	assimilation
65397	17750 ChEBI	betaine	-	assimilation
65397	16947 ChEBI	citrate	-	assimilation
65397	15824 ChEBI	D-fructose	-	assimilation
65397	12936 ChEBI	D-galactose	-	assimilation
65397	18024 ChEBI	D-galacturonic acid	-	assimilation
65397	17634 ChEBI	D-glucose	-	assimilation
65397	62318 ChEBI	D-lyxose	-	assimilation
65397	16024 ChEBI	D-mannose	-	assimilation
65397	17924 ChEBI	D-sorbitol	+	assimilation
65397	29806 ChEBI	fumarate	+	assimilation
65397	29805 ChEBI	glycolate	-	assimilation
65397	36655 ChEBI	glyoxylate	-	assimilation
65397	16977 ChEBI	L-alanine	-	assimilation
65397	17196 ChEBI	L-asparagine	-	assimilation
65397	29991 ChEBI	L-aspartate	+	assimilation
65397	17561 ChEBI	L-cysteine	+	assimilation
65397	18287 ChEBI	L-fucose	-	assimilation
65397	29985 ChEBI	L-glutamate	+	assimilation
65397	15971 ChEBI	L-histidine	-	assimilation
65397	15603 ChEBI	L-leucine	-	assimilation
65397	17115 ChEBI	L-serine	-	assimilation
65397	25115 ChEBI	malate	+	assimilation
65397	15792 ChEBI	malonate	+	assimilation
65397	30623 ChEBI	oxalate	-	assimilation
65397	16452 ChEBI	oxaloacetate	+	assimilation
65397	17272 ChEBI	propionate	+	assimilation
65397	15361 ChEBI	pyruvate	+	assimilation
65397	30031 ChEBI	succinate	+	assimilation

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Aquatic

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Isolation procedure	Isolation date
65397	water sample at circa 0.2 m depth	2015-07	Lake Melu (Lac de Melu/Lac de Melo) a small lake located in the mountains (Restonica valley) of the Mediterranean island of Corsica	France	FRA	Europe	42.213	9.023 42.213/9.023	nutrient broth soyatone yeast extract medium	filtration-acclimatization method
120890	Environment, Water, freshwater lake		Lake of Melo, Corsica	France	FRA	Europe					2015-07-13

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
120890	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2710724120 annotated assembly for Polynucleobacter meluiroseus AP-Melu-1000-B4	contig	GCA_900205755	1938814.3	2710724120	1938814	70.63

16S sequences

@ref	Description	Accession	Database
65397	Polynucleobacter meluiroseus strain AP-Melu-1000-B4 16S ribosomal RNA gene, partial sequence	MF872602

GC content

@ref	GC-content (mol%)	Method
65397	46.6	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Polynucleobacter meluiroseus AP-Melu-1000-B4
NCBI: GCA_900205755

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.10	no
125439	motility	BacteriaNetⓘ	yes	74.50	no
125439	gram_stain	BacteriaNetⓘ	negative	97.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Polynucleobacter meluiroseus sp. nov., a bacterium isolated from a lake located in the mountains of the Mediterranean island of Corsica.	Pitt A, Schmidt J, Lang E, Whitman WB, Woyke T, Hahn MW	Int J Syst Evol Microbiol	10.1099/ijsem.0.002777	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65397	Alexandra Pitt, Johanna Schmidt, Elke Lang, William B. Whitman, Tanja Woyke, Martin W. Hahn: Polynucleobacter meluiroseus sp. nov., a bacterium isolated from a lake located in the mountains of the Mediterranean island of Corsica. IJSEM 2018: 1975 - 1985 68 ( DOI 10.1099/ijsem.0.002777 , PubMed 29688164 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#120890	Collection of Institut Pasteur ; Curators of the CIP; CIP 111329
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Polynucleobacter meluiroseus (DSM 103591, CIP 111329, AP-Melu-1000-B4)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Nutrition type

Spore formation

Halophily

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900205755

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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