Uliginosibacterium sediminicola (KACC 19271, JCM 32000, M1-21)

Name: Uliginosibacterium sediminicola (KACC 19271, JCM 32000, M1-21)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158641

Type strain

Strain Designation M1-21

Culture col. no. KACC 19271 JCM 32000 M1-21

NCBI tax ID(s) 2024550

Special Collections JCM Literature strains

History T.-Y. Ahn; Dept. of Microbiol., Coll. of Nat. Sci., Dankook Univ., South Korea; M1-21.

Links

Uliginosibacterium sediminicola M1-21 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from freshwater sediment sample.

Gram-negative motile rod-shaped colony-forming aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 391021

JCM 32000

@ref 20215

Last LPSN update 2026-02-09 11:38:23

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Rhodocyclales

Family Zoogloeaceae

Genus Uliginosibacterium

Species Uliginosibacterium sediminicola

Full scientific name Uliginosibacterium sediminicola Hwang et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement
65366	negative	0.8-1.2 µm	0.4-0.5 µm	rod-shaped		monotrichous, polar

Colony morphology

@ref	Colony color	Colony shape	Incubation period	Medium used
65366	ivory-white	circular	3 days	R2A

Culture and growth conditions

Culture medium

@ref	Name	Growth
65366	Reasoner's 2A agar (R2A)
65366	Nutrient agar (NA)
65366	tryptic soy agar
65366	MacConkey agar

Culture temp

@ref	Growth	Type	Temperature (°C)
65366	positive	growth	10-40
65366	positive	optimum	25
67770	positive	growth	25

Culture pH

@ref	Ability	Type	PH
65366	positive	optimum	7
65366	positive	growth	6-8

Physiology and metabolism

Oxygen tolerance

65366

Oxygen toleranceaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65366	NaCl	positive	growth	0-0.75 %(w/v)
65366	NaCl	positive	optimum	0 %(w/v)

Observation

65366

ObservationPHB accumulation is observed

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65366	17128 ChEBI	adipate	-	assimilation
65366	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
65366		casein	-	hydrolysis
65366	17634 ChEBI	D-glucose	-	assimilation
65366	17634 ChEBI	D-glucose	-	fermentation
65366	16899 ChEBI	D-mannitol	-	assimilation
65366	16024 ChEBI	D-mannose	-	assimilation
65366	27689 ChEBI	decanoate	-	assimilation
65366	4853 ChEBI	esculin	-	hydrolysis
65366	28757 ChEBI	fructose	+	builds acid from
65366	5291 ChEBI	gelatin	+	hydrolysis
65366	17234 ChEBI	glucose	+	builds acid from
65366	30849 ChEBI	L-arabinose	-	assimilation
65366	17895 ChEBI	L-tyrosine	-	hydrolysis
65366	17716 ChEBI	lactose	-	builds acid from
65366	25115 ChEBI	malate	-	assimilation
65366	17306 ChEBI	maltose	-	assimilation
65366	17306 ChEBI	maltose	-	builds acid from
65366	29864 ChEBI	mannitol	-	builds acid from
65366	506227 ChEBI	N-acetylglucosamine	-	assimilation
65366	17632 ChEBI	nitrate	-	reduction
65366	18401 ChEBI	phenylacetate	-	assimilation
65366	32032 ChEBI	potassium gluconate	-	assimilation
65366	53258 ChEBI	sodium citrate	-	assimilation
65366	30911 ChEBI	sorbitol	-	builds acid from
65366	28017 ChEBI	starch	-	hydrolysis
65366	17992 ChEBI	sucrose	+	builds acid from
65366	18222 ChEBI	xylose	-	builds acid from

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
65366	28971	ampicillin	10 µg (disc)
65366	28669	bacitracin	10 Unit (disc)
65366	204928	cefotaxime	30 µg (disc)
65366	17698	chloramphenicol	30 µg (disc)
65366	48923	erythromycin	15 µg (disc)
65366	17833	gentamicin	30 µg (disc)
65366	6104	kanamycin	30 µg (disc)
65366	28368	novobiocin	30 µg (disc)
65366	18208	penicillin g		10 Unit (disc)
65366	8309	polymyxin b	300 Unit (disc)
65366	28077	rifampicin	5 µg (disc)
65366	17076	streptomycin	10 µg (disc)
65366	27902	tetracycline	30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
65366	16136 ChEBI	hydrogen sulfide
65366	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
65366	acid phosphatase	+	3.1.3.2
65366	alkaline phosphatase	+	3.1.3.1
65366	alpha-chymotrypsin	+	3.4.21.1
65366	alpha-fucosidase	-	3.2.1.51
65366	alpha-galactosidase	-	3.2.1.22
65366	alpha-glucosidase	+	3.2.1.20
65366	alpha-mannosidase	-	3.2.1.24
65366	arginine dihydrolase	+	3.5.3.6
65366	beta-galactosidase	-	3.2.1.23
65366	beta-glucosidase	-	3.2.1.21
65366	beta-glucuronidase	-	3.2.1.31
65366	catalase	+	1.11.1.6
65366	cystine arylamidase	+	3.4.11.3
65366	cytochrome oxidase	-	1.9.3.1
65366	esterase (C 4)	+
65366	esterase Lipase (C 8)	+
65366	leucine arylamidase	+	3.4.11.1
65366	lipase (C 14)	+
65366	N-acetyl-beta-glucosaminidase	-	3.2.1.52
65366	naphthol-AS-BI-phosphohydrolase	+
65366	protease	-
65366	urease	+	3.5.1.5
65366	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

65366

Fatty acid	Percentage
C16:1ω6c and/or C16:1ω7c	42.6
C16:0	26.8
C12:0	8.1
C18:1ω7c and/or C18:1ω6c	5.9
C10:0 3OH	4.4
C14:0	4.1
C12:0 3OH	2.6
C16:0 iso	1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
65366	freshwater sediment sample	Cheonan	Republic of Korea	KOR	Asia	R2A	3 days	25	standard dilution plating technique
67770	Freshwater sediment in Cheonan		Republic of Korea	KOR	Asia

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Database
65366	Uliginosibacterium sediminicola strain M1-21 16S ribosomal RNA gene, partial sequence	KY649438

GC content

@ref	GC-content (mol%)	Method
65366	61.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Uliginosibacterium sediminicola sp. nov., isolated from freshwater sediment.	Hwang WM, Kim SM, Kang K, Ahn TY	Int J Syst Evol Microbiol	10.1099/ijsem.0.002611	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65366	Woon Mo Hwang, Su Min Kim, Keunsoo Kang, Tae-Young Ahn: Uliginosibacterium sediminicola sp. nov., isolated from freshwater sediment. IJSEM 68: 924 - 929 2018 ( DOI 10.1099/ijsem.0.002611 , PubMed 29458494 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Uliginosibacterium sediminicola (KACC 19271, JCM 32000, M1-21)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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