Name: Flavobacterium kingsejongi WV39
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158639

Type strain:

Species: Flavobacterium kingsejongi

Strain Designation: WV39

Culture col. no.: KCTC 42908, CECT 9085

Strain history: <- Pyung cheon Lee, Ajou Univ.

NCBI tax ID(s): 1678728 (species)

Special Collections

Section

Flavobacterium kingsejongi WV39 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from From penguin excrement.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium kingsejongi**
	Full Scientific Name (LPSN)	Flavobacterium kingsejongi Choi et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65364]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.983

[Ref.: #65364]	Cell length	1.4-1.8 µm

[Ref.: #65364]	Cell width	0.4-0.5 µm

[Ref.: #65364]	Cell shape	rod-shaped

[Ref.: #65364]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90

[Ref.: #65364]	Flagellum arrangement	gliding

[Ref.: #65364]	Colony color	yellow-orange
[Ref.: #65364]	Colony shape	circular
[Ref.: #65364]	Cultivation medium used	marine agar 2216

[Ref.: #65364]	Pigment production	no
[Ref.: #65364]	Pigment name	carotenoid zeaxanthin
[Ref.: #65364]	Pigment production	no
[Ref.: #65364]	Pigment name	flexirubin-type pigments

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65364]

Culture medium

Marine agar (MA)

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

tryptic soy agar

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Culture medium growth

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Culture medium

Simmonns'citrate

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Culture medium growth

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Culture medium

MacConkey agar

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Culture medium growth

		Temperature
[Ref.: #65364]	growth	10-37 °C
[Ref.: #65364]	optimum	25 °C
[Ref.: #67771]	growth	25 °C

	pH	Kind of pH		pH
[Ref.: #65364]			optimum	7
[Ref.: #65364]			growth	5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65364]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65364]		NaCl		growth	0.5-8	%(w/v)
[Ref.: #65364]		NaCl		optimum	6	%(w/v)

[Ref.: #65364]

Observation

Congo red is not adsorbed by the colonies.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65364]	adipate ChEBI	+	assimilation
[Ref.: #65364]	agar ChEBI	-	hydrolysis
[Ref.: #65364]	alginate ChEBI	-	hydrolysis
[Ref.: #65364]	amygdalin ChEBI	+	builds acid from
[Ref.: #65364]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #65364]	casein	-	hydrolysis
[Ref.: #65364]	citrate ChEBI	-	assimilation
[Ref.: #65364]	D-glucose ChEBI	-	builds acid from
[Ref.: #65364]	D-glucose ChEBI	-	fermentation
[Ref.: #65364]	D-glucose ChEBI	+	assimilation
[Ref.: #65364]	D-mannitol ChEBI	-	builds acid from
[Ref.: #65364]	D-mannitol ChEBI	+	assimilation
[Ref.: #65364]	D-mannose ChEBI	-	assimilation
[Ref.: #65364]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #65364]	decanoate ChEBI	-	assimilation
[Ref.: #65364]	dna ChEBI	-	hydrolysis
[Ref.: #65364]	esculin ChEBI	+	hydrolysis
[Ref.: #65364]	gelatin ChEBI	+	hydrolysis
[Ref.: #65364]	L-arabinose ChEBI	-	assimilation
[Ref.: #65364]	L-arabinose ChEBI	-	builds acid from
[Ref.: #65364]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #65364]	malate ChEBI	-	assimilation
[Ref.: #65364]	maltose ChEBI	+	assimilation
[Ref.: #65364]	melibiose ChEBI	+	builds acid from
[Ref.: #65364]	myo-inositol ChEBI	-	builds acid from
[Ref.: #65364]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #65364]	nitrate ChEBI	-	reduction
[Ref.: #65364]	phenylacetate ChEBI	-	assimilation
[Ref.: #65364]	potassium gluconate ChEBI	+	assimilation
[Ref.: #65364]	sodium citrate ChEBI	-	assimilation
[Ref.: #65364]	starch ChEBI	+	hydrolysis
[Ref.: #65364]	sucrose ChEBI	-	builds acid from
[Ref.: #65364]	tween 20 ChEBI	+	hydrolysis
[Ref.: #65364]	tween 80 ChEBI	+	hydrolysis
[Ref.: #65364]	tyrosine ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #65364]	ampicillin ChEBI	yes	100	µg/mL
[Ref.: #65364]	chloramphenicol ChEBI	yes	100	µg/mL
[Ref.: #65364]	erythromycin ChEBI	yes	50	µg/mL
[Ref.: #65364]	kanamycin ChEBI				yes	30	µg/mL
[Ref.: #65364]	streptomycin ChEBI	yes	50	µg/mL
[Ref.: #65364]	tetracycline ChEBI	yes	30	µg/mL

	Metabolite	Production
[Ref.: #65364]	acetoin ChEBI	yes
[Ref.: #65364]	hydrogen sulfide ChEBI	no
[Ref.: #65364]	indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65364]	acid phosphatase	-	3.1.3.2
[Ref.: #65364]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65364]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65364]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65364]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65364]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65364]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65364]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65364]	beta-galactosidase	+	3.2.1.23
[Ref.: #65364]	beta-glucosidase	-	3.2.1.21
[Ref.: #65364]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65364]	catalase	+	1.11.1.6
[Ref.: #65364]	cystine arylamidase	-	3.4.11.3
[Ref.: #65364]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65364]	esterase (C 4)	-
[Ref.: #65364]	esterase Lipase (C 8)	+
[Ref.: #65364]	leucine arylamidase	+	3.4.11.1
[Ref.: #65364]	lipase (C 14)	-
[Ref.: #65364]	lysine decarboxylase	-	4.1.1.18
[Ref.: #65364]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65364]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65364]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #65364]	trypsin	-	3.4.21.4
[Ref.: #65364]	tryptophan deaminase	+	4.1.99.1
[Ref.: #65364]	urease	-	3.5.1.5
[Ref.: #65364]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65364]

Fatty acid	Percentage
C15:0 iso	21.1
C15:0 iso 3OH	15.9
C15:0 iso 2OH and/or C16:1ω7c	10.6
C16:0 3OH	7.6
C17:0 iso 3OH	7.4
C16:0	6.5
C15:1ω6c	5.6
C14:0	3.1
C16:0 iso 3OH	1.6
iso-C17:1ω9c and/or C16:0 10-methyl.	1.6

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	kanosamine biosynthesis II	100	2 of 2
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	teichoic acid biosynthesis	100	1 of 1
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	photosynthesis	92.86	13 of 14
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	tetrahydrofolate metabolism	85.71	12 of 14
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	flavin biosynthesis	80	12 of 15
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	heme metabolism	71.43	10 of 14
[Ref.: #66794]	purine metabolism	70.21	66 of 94
[Ref.: #66794]	Entner Doudoroff pathway	70	7 of 10
[Ref.: #66794]	phenylalanine metabolism	69.23	9 of 13
[Ref.: #66794]	tryptophan metabolism	68.42	26 of 38
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	CO2 fixation in Crenarchaeota	66.67	6 of 9
[Ref.: #66794]	pyrimidine metabolism	66.67	30 of 45
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	serine metabolism	66.67	6 of 9
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	histidine metabolism	65.52	19 of 29
[Ref.: #66794]	alanine metabolism	65.52	19 of 29
[Ref.: #66794]	methionine metabolism	65.38	17 of 26
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	glutamate and glutamine metabolism	64.29	18 of 28
[Ref.: #66794]	citric acid cycle	64.29	9 of 14
[Ref.: #66794]	lysine metabolism	64.29	27 of 42
[Ref.: #66794]	vitamin B6 metabolism	63.64	7 of 11
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	non-pathway related	63.16	24 of 38
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	glycine betaine biosynthesis	60	3 of 5
[Ref.: #66794]	arachidonate biosynthesis	60	3 of 5
[Ref.: #66794]	propionate fermentation	60	6 of 10
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	lipid metabolism	58.06	18 of 31
[Ref.: #66794]	tyrosine metabolism	57.14	8 of 14
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	carotenoid biosynthesis	54.55	12 of 22
[Ref.: #66794]	leucine metabolism	53.85	7 of 13
[Ref.: #66794]	phenylpropanoid biosynthesis	53.85	7 of 13
[Ref.: #66794]	arginine metabolism	50	12 of 24
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	glutathione metabolism	50	7 of 14
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	isoleucine metabolism	50	4 of 8
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	isoprenoid biosynthesis	50	13 of 26
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	pentose phosphate pathway	45.45	5 of 11
[Ref.: #66794]	metabolism of disaccharids	45.45	5 of 11
[Ref.: #66794]	valine metabolism	44.44	4 of 9
[Ref.: #66794]	oxidative phosphorylation	43.96	40 of 91
[Ref.: #66794]	reductive acetyl coenzyme A pathway	42.86	3 of 7
[Ref.: #66794]	ascorbate metabolism	40.91	9 of 22
[Ref.: #66794]	O-antigen biosynthesis	40	2 of 5
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	D-cycloserine biosynthesis	40	2 of 5
[Ref.: #66794]	urea cycle	38.46	5 of 13
[Ref.: #66794]	androgen and estrogen metabolism	37.5	6 of 16
[Ref.: #66794]	proline metabolism	36.36	4 of 11
[Ref.: #66794]	degradation of pentoses	35.71	10 of 28
[Ref.: #66794]	polyamine pathway	34.78	8 of 23
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	degradation of sugar alcohols	31.25	5 of 16
[Ref.: #66794]	sulfate reduction	30.77	4 of 13
[Ref.: #66794]	myo-inositol biosynthesis	30	3 of 10
[Ref.: #66794]	4-hydroxyphenylacetate degradation	30	3 of 10
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	aclacinomycin biosynthesis	28.57	2 of 7
[Ref.: #66794]	degradation of hexoses	27.78	5 of 18
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	3-phenylpropionate degradation	26.67	4 of 15
[Ref.: #66794]	phenol degradation	25	5 of 20
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	23.08	3 of 13
[Ref.: #66794]	nitrate assimilation	22.22	2 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
[Ref.: #66794]	arachidonic acid metabolism	22.22	4 of 18
[Ref.: #66794]	chlorophyll metabolism	22.22	4 of 18
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67771]	Sample type/isolated from	From penguin excrement
[Ref.: #67771]	Country	Antarctica
[Ref.: #67771]	Country ISO 3 Code	ATA
[Ref.: #67771]	Continent	Australia and Oceania

[Ref.: #65364]	Sample type/isolated from	penguin faecal
[Ref.: #65364]	Geographic location (country and/or sea, region)	King Sejong station on King George Island
[Ref.: #65364]	Country	Antarctica
[Ref.: #65364]	Country ISO 3 Code	ATA
[Ref.: #65364]	Continent	Australia and Oceania
[Ref.: #65364]	Geographic location	-62.2459°/-58.7767°
[Ref.: #65364]	Enrichment culture	marine agar 2216
[Ref.: #65364]	Enrichment culture duration	5 days
[Ref.: #65364]	Enrichment culture temperature	25 ̊C
* marker position based on {}

Isolation sources categories

#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Birds	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT239020 (>99% sequence identity) for Flavobacterium from Microbeatlas

Aquatic Samples	53
Soil Samples	44
Animal Samples	177
Plant Samples	19
Total Samples	293

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65364]	Flavobacterium kingsejongi strain WV39 16S ribosomal RNA gene, partial sequence	KT239020		GenBank ENA

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium kingsejongi WV39	GCA_003076475	complete	GenBank ENA	1678728 tax ID	*
[Ref.: #66792]	Flavobacterium sp. AJ004	1981981.3	complete	PATRIC	1678728 tax ID	*

[Ref.: #65364]

GC-content

39.8 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium kingsejongi WV39 NCBI: GCA_003076475.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium kingsejongi WV39 NCBI: GCA_003076475.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.983	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.241	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.387	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.303	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.791	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90	no

Availability in culture collections External links

[Ref.: #65364]

Culture collection no.

KCTC 42908, CECT 9085

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium kingsejongi sp. nov., a carotenoid-producing species isolated from Antarctic penguin faeces.	Choi JY, Kim JH, Lee PC	Int J Syst Evol Microbiol	10.1099/ijsem.0.002610	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65364

Jun Young Choi, Jin Ho Kim, Pyung Cheon Lee: Flavobacterium kingsejongi sp. nov., a carotenoid-producing species isolated from Antarctic penguin faeces. IJSEM 68: 911 - 916 2018 ( DOI 10.1099/ijsem.0.002610 , PubMed 29458488 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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