Name: Marivivens niveibacter HSLHS2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158611

Type strain:

Species: Marivivens niveibacter

Strain Designation: HSLHS2

Culture col. no.: KCTC 52588, MCCC 1A06712

Strain history: <- Liping Wang, Dong Hu, Third Institute of Oceanography, State Oceanic Administration

NCBI tax ID(s): 1930667 (species)

Section

Marivivens niveibacter HSLHS2 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from surface seawater of a tropical mangrove forest.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Marivivens*
	Species	**Marivivens niveibacter**
	Full Scientific Name (LPSN)	Marivivens niveibacter Hu et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65331]	Gram stain	negative

[Ref.: #65331]	Cell length	1-1.8 µm

[Ref.: #65331]	Cell width	0.6-0.8 µm

[Ref.: #65331]	Cell shape	rod-shaped

[Ref.: #65331]	Motility	no

[Ref.: #65331]	Colony size	1-2 mm
[Ref.: #65331]	Colony color	white
[Ref.: #65331]	Colony shape	circular
[Ref.: #65331]	Incubation period	1 day
[Ref.: #65331]	Cultivation medium used	marine agar 2216

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65331]

Culture medium

Marine agar (MA)

[Ref.: #65331]

Culture medium growth

		Temperature
[Ref.: #65331]	growth	5-40 °C
[Ref.: #65331]	optimum	35 °C
[Ref.: #67771]	growth	35 °C

[Ref.: #65331]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65331]			optimum	8
[Ref.: #65331]			growth	6-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65331]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65331]		NaCl		growth	0-10	%(w/v)
[Ref.: #65331]		NaCl		optimum	2	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65331]	adipate ChEBI	-	assimilation
[Ref.: #65331]	amygdalin ChEBI	-	fermentation
[Ref.: #65331]	arabinose ChEBI	-	fermentation
[Ref.: #65331]	casein	-	hydrolysis
[Ref.: #65331]	citrate ChEBI	-	assimilation
[Ref.: #65331]	D-glucose ChEBI	-	assimilation
[Ref.: #65331]	D-mannitol ChEBI	-	assimilation
[Ref.: #65331]	D-mannose ChEBI	-	assimilation
[Ref.: #65331]	decanoate ChEBI	-	assimilation
[Ref.: #65331]	esculin ChEBI	+	hydrolysis
[Ref.: #65331]	gelatin ChEBI	+	hydrolysis
[Ref.: #65331]	glucose ChEBI	-	fermentation
[Ref.: #65331]	L-arabinose ChEBI	-	assimilation
[Ref.: #65331]	malate ChEBI	-	assimilation
[Ref.: #65331]	maltose ChEBI	-	assimilation
[Ref.: #65331]	mannitol ChEBI	+	fermentation
[Ref.: #65331]	melibiose ChEBI	-	fermentation
[Ref.: #65331]	myo-inositol ChEBI	-	fermentation
[Ref.: #65331]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #65331]	nitrate ChEBI	+	reduction
[Ref.: #65331]	phenylacetate ChEBI	-	assimilation
[Ref.: #65331]	potassium gluconate ChEBI	-	assimilation
[Ref.: #65331]	rhamnose ChEBI	-	fermentation
[Ref.: #65331]	sodium citrate ChEBI	-	assimilation
[Ref.: #65331]	sorbitol ChEBI	-	fermentation
[Ref.: #65331]	starch ChEBI	-	hydrolysis
[Ref.: #65331]	sucrose ChEBI	-	fermentation
[Ref.: #65331]	tween 20 ChEBI	-	hydrolysis
[Ref.: #65331]	tween 40 ChEBI	-	hydrolysis
[Ref.: #65331]	tween 60 ChEBI	-	hydrolysis
[Ref.: #65331]	tween 80 ChEBI	-	hydrolysis
[Ref.: #65331]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #65331]	acetoin ChEBI	yes
[Ref.: #65331]	hydrogen sulfide ChEBI	yes
[Ref.: #65331]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #65331]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #65331]	acid phosphatase	+	3.1.3.2
[Ref.: #65331]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65331]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65331]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65331]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65331]	alpha-glucosidase	-	3.2.1.20
[Ref.: #65331]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65331]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65331]	beta-glucosidase	+	3.2.1.21
[Ref.: #65331]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65331]	catalase	+	1.11.1.6
[Ref.: #65331]	cystine arylamidase	-	3.4.11.3
[Ref.: #65331]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65331]	esterase (C 4)	+
[Ref.: #65331]	esterase Lipase (C 8)	+
[Ref.: #65331]	gelatinase	+
[Ref.: #65331]	leucine aminopeptidase	+	3.4.1.1
[Ref.: #65331]	lipase (C 14)	+
[Ref.: #65331]	lysine decarboxylase	-	4.1.1.18
[Ref.: #65331]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65331]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65331]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #65331]	trypsin	-	3.4.21.4
[Ref.: #65331]	tryptophan decarboxylase	-	4.1.1.27
[Ref.: #65331]	urease	-	3.5.1.5
[Ref.: #65331]	valine aminopeptidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65331]

Fatty acid	Percentage	ECL
C18:1ω6c and/or C18:1ω7c	62.5
C16:0	14.7
C18:0	4.3
C10:0 3OH	3.3
unknown fatty acid 18.846 (ECL), C19:1&omega	2.5	19
11-methyl-C18:1ω7c	2.5
C12:1 3OH	2
C18:1ω9c	1.3
C16:1 iso I and/or C14:0 iso 3OH	1.2
C18:2ω6,9c and/or ante-C18:0	1

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	molybdenum cofactor biosynthesis	100	9 of 9
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	Entner Doudoroff pathway	100	10 of 10
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	hydrogen production	100	5 of 5
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	butanoate fermentation	100	4 of 4
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	octane oxidation	100	3 of 3
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	pentose phosphate pathway	90.91	10 of 11
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	allantoin degradation	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	tetrahydrofolate metabolism	85.71	12 of 14
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	glycolate and glyoxylate degradation	83.33	5 of 6
[Ref.: #66794]	glutamate and glutamine metabolism	82.14	23 of 28
[Ref.: #66794]	phenylacetate degradation (aerobic)	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	gallate degradation	80	4 of 5
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	NAD metabolism	77.78	14 of 18
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	purine metabolism	77.66	73 of 94
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	leucine metabolism	76.92	10 of 13
[Ref.: #66794]	pyrimidine metabolism	75.56	34 of 45
[Ref.: #66794]	degradation of sugar alcohols	75	12 of 16
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	vitamin B6 metabolism	72.73	8 of 11
[Ref.: #66794]	alanine metabolism	72.41	21 of 29
[Ref.: #66794]	reductive acetyl coenzyme A pathway	71.43	5 of 7
[Ref.: #66794]	citric acid cycle	71.43	10 of 14
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	non-pathway related	71.05	27 of 38
[Ref.: #66794]	lipid A biosynthesis	66.67	6 of 9
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	lipid metabolism	64.52	20 of 31
[Ref.: #66794]	lysine metabolism	64.29	27 of 42
[Ref.: #66794]	proline metabolism	63.64	7 of 11
[Ref.: #66794]	tryptophan metabolism	63.16	24 of 38
[Ref.: #66794]	oxidative phosphorylation	62.64	57 of 91
[Ref.: #66794]	carnitine metabolism	62.5	5 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	degradation of hexoses	61.11	11 of 18
[Ref.: #66794]	degradation of pentoses	60.71	17 of 28
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	propionate fermentation	60	6 of 10
[Ref.: #66794]	myo-inositol biosynthesis	60	6 of 10
[Ref.: #66794]	3-phenylpropionate degradation	60	9 of 15
[Ref.: #66794]	histidine metabolism	58.62	17 of 29
[Ref.: #66794]	arginine metabolism	58.33	14 of 24
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	glutathione metabolism	57.14	8 of 14
[Ref.: #66794]	tyrosine metabolism	57.14	8 of 14
[Ref.: #66794]	degradation of sugar acids	56	14 of 25
[Ref.: #66794]	aspartate and asparagine metabolism	55.56	5 of 9
[Ref.: #66794]	urea cycle	53.85	7 of 13
[Ref.: #66794]	isoprenoid biosynthesis	53.85	14 of 26
[Ref.: #66794]	4-hydroxyphenylacetate degradation	50	5 of 10
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	biotin biosynthesis	50	2 of 4
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	cysteine metabolism	50	9 of 18
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	phenol degradation	50	10 of 20
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	glycogen biosynthesis	50	2 of 4
[Ref.: #66794]	sulfate reduction	46.15	6 of 13
[Ref.: #66794]	ascorbate metabolism	45.45	10 of 22
[Ref.: #66794]	d-xylose degradation	45.45	5 of 11
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	44.44	4 of 9
[Ref.: #66794]	androgen and estrogen metabolism	43.75	7 of 16
[Ref.: #66794]	factor 420 biosynthesis	40	2 of 5
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	polyamine pathway	39.13	9 of 23
[Ref.: #66794]	arachidonic acid metabolism	38.89	7 of 18
[Ref.: #66794]	methane metabolism	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	vitamin B12 metabolism	32.35	11 of 34
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	30.77	4 of 13
[Ref.: #66794]	starch degradation	30	3 of 10
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	metabolism of disaccharids	27.27	3 of 11
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	vitamin E metabolism	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65331]	Sample type/isolated from	surface seawater of a tropical mangrove forest
[Ref.: #65331]	Sampling date	2010-05
[Ref.: #65331]	Geographic location (country and/or sea, region)	Hainan
[Ref.: #65331]	Country	China
[Ref.: #65331]	Country ISO 3 Code	CHN
[Ref.: #65331]	Continent	Asia
[Ref.: #65331]	Geographic location	19.9666°/110.5670°
[Ref.: #65331]	Enrichment culture	marine agar 2216
[Ref.: #65331]	Enrichment culture duration	5 days
[Ref.: #65331]	Enrichment culture temperature	28 ̊C
[Ref.: #65331]	Isolation/enrichment procedure	dilutions of seawater were plated

[Ref.: #67771]	Sample type/isolated from	From the waterways of mangrove
[Ref.: #67771]	Geographic location (country and/or sea, region)	Hainan Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Aquatic	#Mangrove
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Surface water

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65331]	16S rRNA gene sequence	KY020996		GenBank

[Ref.: #65331]

GC-content

54.6 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #65331]

Culture collection no.

KCTC 52588, MCCC 1A06712

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marivivens aquimaris sp. nov., isolated from seawater.	Kim JA, Lee B, Kang JY, Song JJ, Choi JH	Arch Microbiol	10.1007/s00203-021-02305-7	2021	*
Phylogeny	Marivivens niveibacter sp. nov., isolated from the seawater of tropical mangrove.	Hu D, Wang L, Lai Q, Sun F, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.002544	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65331

Dong Hu, Liping Wang, Qiliang Lai, Fengqin Sun, Zongze Shao: Marivivens niveibacter sp. nov., isolated from the seawater of tropical mangrove. IJSEM 68: 570 - 574 2018 ( DOI 10.1099/ijsem.0.002544 , PubMed 29388535 )

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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