Strain identifier

BacDive ID: 158611

Type strain: Yes

Species: Marivivens niveibacter

Strain Designation: HSLHS2

Strain history: <- Liping Wang, Dong Hu, Third Institute of Oceanography, State Oceanic Administration

NCBI tax ID(s): 1930667 (species)

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General

@ref: 65331

BacDive-ID: 158611

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming

description: Marivivens niveibacter HSLHS2 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from surface seawater of a tropical mangrove forest.

NCBI tax id

  • NCBI tax id: 1930667
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Liping Wang, Dong Hu, Third Institute of Oceanography, State Oceanic Administration

doi: 10.13145/bacdive158611.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Marivivens
  • species: Marivivens niveibacter
  • full scientific name: Marivivens niveibacter Hu et al. 2018

@ref: 65331

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Marivivens

species: Marivivens niveibacter

strain designation: HSLHS2

type strain: yes

Morphology

cell morphology

  • @ref: 65331
  • gram stain: negative
  • cell length: 1-1.8 µm
  • cell width: 0.6-0.8 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 65331
  • colony size: 1-2 mm
  • colony color: white
  • colony shape: circular
  • incubation period: 1 day
  • medium used: marine agar 2216

Culture and growth conditions

culture medium

  • @ref: 65331
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
65331positivegrowth5-40
65331positiveoptimum35mesophilic
67771positivegrowth35mesophilic

culture pH

@refabilitytypepHPH range
65331positivegrowth6-10alkaliphile
65331positiveoptimum8

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
65331aerobe
67771aerobe

halophily

@refsaltgrowthtested relationconcentration
65331NaClpositivegrowth0-10 %(w/v)
65331NaClpositiveoptimum2 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6533117128adipate-assimilation
6533127613amygdalin-fermentation
6533122599arabinose-fermentation
6533127689decanoate-assimilation
65331casein-hydrolysis
6533116947citrate-assimilation
6533117634D-glucose-assimilation
6533116899D-mannitol-assimilation
6533116024D-mannose-assimilation
653314853esculin+hydrolysis
653315291gelatin+hydrolysis
6533117234glucose-fermentation
6533117268myo-inositol-fermentation
6533130849L-arabinose-assimilation
6533125115malate-assimilation
6533117306maltose-assimilation
6533129864mannitol+fermentation
6533128053melibiose-fermentation
65331506227N-acetylglucosamine-assimilation
6533117632nitrate+reduction
6533118401phenylacetate-assimilation
6533132032potassium gluconate-assimilation
6533126546rhamnose-fermentation
6533153258sodium citrate-assimilation
6533130911sorbitol-fermentation
6533128017starch-hydrolysis
6533117992sucrose-fermentation
6533153424tween 20-hydrolysis
6533153423tween 40-hydrolysis
6533153425tween 60-hydrolysis
6533153426tween 80-hydrolysis
6533116199urea-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6533115688acetoinyes
6533116136hydrogen sulfideyes
6533135581indoleno

metabolite tests

  • @ref: 65331
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
65331catalase+1.11.1.6
65331cytochrome oxidase+1.9.3.1
65331alkaline phosphatase+3.1.3.1
65331esterase (C 4)+
65331esterase Lipase (C 8)+
65331leucine aminopeptidase+3.4.1.1
65331valine aminopeptidase+
65331acid phosphatase+3.1.3.2
65331beta-glucosidase+3.2.1.21
65331lipase (C 14)+
65331naphthol-AS-BI-phosphohydrolase+
65331gelatinase+
65331cystine arylamidase-3.4.11.3
65331alpha-chymotrypsin-3.4.21.1
65331trypsin-3.4.21.4
65331alpha-galactosidase-3.2.1.22
65331beta-glucuronidase-3.2.1.31
65331alpha-glucosidase-3.2.1.20
65331N-acetyl-beta-glucosaminidase-3.2.1.52
65331alpha-mannosidase-3.2.1.24
65331alpha-fucosidase-3.2.1.51
65331urease-3.5.1.5
65331arginine dihydrolase-3.5.3.6
65331lysine decarboxylase-4.1.1.18
65331ornithine decarboxylase-4.1.1.17
65331tryptophan decarboxylase-4.1.1.27

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    65331C16:014.7
    65331C18:04.3
    65331C10:0 3OH3.3
    65331C12:1 3OH2
    65331C18:1ω9c1.3
    6533111-methyl-C18:1ω7c2.5
    65331C16:1 iso I and/or C14:0 iso 3OH1.2
    65331C18:2ω6,9c and/or ante-C18:01
    65331unknown fatty acid 18.846 (ECL), C19:1&omega2.519
    65331C18:1ω6c and/or C18:1ω7c62.5
  • type of FA analysis: whole cell analysis
  • incubation medium: marine agar 2216
  • agar/liquid: agar
  • incubation temperature: 28
  • incubation time: 2
  • software version: Sherlock 6.0B
  • library/peak naming table: TSBA 6.0
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture durationenrichment culture temperatureisolation procedure
65331surface seawater of a tropical mangrove forest2010-05HainanChinaCHNAsia19.9666110.567marine agar 22165 days28dilutions of seawater were plated
67771From the waterways of mangroveHainan ProvinceChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Forest
#Environmental#Aquatic#Mangrove
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Surface water

Sequence information

16S sequences

  • @ref: 65331
  • description: 16S rRNA gene sequence
  • accession: KY020996
  • database: nuccore

GC content

  • @ref: 65331
  • GC-content: 54.6
  • method: genome sequence analysis

External links

@ref: 65331

culture collection no.: KCTC 52588, MCCC 1A06712

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny29388535Marivivens niveibacter sp. nov., isolated from the seawater of tropical mangrove.Hu D, Wang L, Lai Q, Sun F, Shao ZInt J Syst Evol Microbiol10.1099/ijsem.0.0025442018Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/isolation & purification, Seawater/*chemistry, Sequence Analysis, DNA, Ubiquinone/chemistry, *WetlandsTranscriptome
Phylogeny33835235Marivivens aquimaris sp. nov., isolated from seawater.Kim JA, Lee B, Kang JY, Song JJ, Choi JHArch Microbiol10.1007/s00203-021-02305-72021Fatty Acids/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhodobacteraceae/classification/genetics/metabolism, *Seawater/microbiology, Species SpecificityMetabolism

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
65331Dong Hu, Liping Wang, Qiliang Lai, Fengqin Sun, Zongze ShaoMarivivens niveibacter sp. nov., isolated from the seawater of tropical mangrove10.1099/ijsem.0.002544IJSEM 68: 570-574 201829388535
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc