Phascolarctobacterium wakonense (DSM 107698, JCM 32900, MB56)

Name: Phascolarctobacterium wakonense (DSM 107698, JCM 32900, MB56)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158511

Type strain

Strain Designation MB56

Culture col. no. DSM 107698 JCM 32900 MB56

NCBI tax ID(s) 2654621

Special Collections DSMZ JCM

History <- Y. Shigeno, RIKEN, Wako, Saitama, Japan; MB56 <- Y. Benno Y. Shigeno; RIKEN Cluster for Sci. Technol. & Innovation Hub, Japan; MB56.

Links

Phascolarctobacterium wakonense MB56 is a mesophilic prokaryote that was isolated from common marmoset faeces.

mesophilic 16S sequence

Name and taxonomic classification

SI-ID 402886

JCM 32900,DSM 107698

@ref 20215

Last LPSN update 2026-02-09 11:38:21

Domain Bacteria

Phylum Bacillota

Class Negativicutes

Order Acidaminococcales

Family Acidaminococcaceae

Genus Phascolarctobacterium

Species Phascolarctobacterium wakonense

Full scientific name Phascolarctobacterium wakonense Shigeno et al. 2019

BacDive ID	Other strains from **Phascolarctobacterium wakonense** (1)	Type strain
158510	P. wakonense MB11, DSM 107697, JCM 32899 (type strain)

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65188	PY + X MEDIUM (DSMZ Medium 104b)		Medium recipe at MediaDive	Name: PY + X MEDIUM (DSMZ Medium 104b; with strain-specific modifications) Composition: Yeast extract 10.0 g/l Disodium succinate 8.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
65188	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Primates

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
65188	common marmoset (Callithrix jacchus) faeces			Japan	JPN	Asia
67770	Common marmoset (Callithrixjacchus) feces	Callithrixjacchus	Saitama	Japan	JPN	Asia

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65188	Phascolarctobacterium wakonense MB56 gene for 16S ribosomal RNA, partial sequence	LC389066	1440		2654621

GC content

@ref	GC-content (mol%)	Method
65188	48
67770	47.7-48.0	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65188	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107698
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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