Bifidobacterium aemilianum (DSM 104956, LMG 30143, XV10)

Name: Bifidobacterium aemilianum (DSM 104956, LMG 30143, XV10)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158512

Type strain

Strain Designation XV10

Culture col. no. DSM 104956 LMG 30143 XV10 JCM 33373

NCBI tax ID(s) 2493120

Special Collections DSMZ JCM

History DSMZ <- D. Alberoni; University of Bologna, Bologna, ITALY; XV10 <-Teagasc <-University of Bologna JCM <-- LMG 30143 <-- D. Alberoni; Dept. of Agric. & Food Sci., Univ. of Bologna, Italy; XV10.

Links

Bifidobacterium aemilianum XV10 is a bacterium that was isolated from Isolated from the gut of Xylocopa violacea .

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 403297

LMG 30143,JCM 33373,DSM 104956

@ref 20215

Last LPSN update 2026-05-29 08:43:59

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Bifidobacteriales

Family Bifidobacteriaceae

Genus Bifidobacterium

Species Bifidobacterium aemilianum

Full scientific name Bifidobacterium aemilianum Alberoni et al. 2019

BacDive ID	Other strains from **Bifidobacterium aemilianum** (1)	Type strain
158513	B. aemilianum XV4, DSM 106832, LMG 30565

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65189	BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)		Medium recipe at MediaDive	Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
65189	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	92.71

Spore formation

@ref	Spore formation	Confidence
125439		97.603

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	acetate fermentation	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	adipate degradation	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	starch degradation	90	9 of 10
66794	threonine metabolism	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	photosynthesis	85.71	12 of 14
66794	pentose phosphate pathway	81.82	9 of 11
66794	glycogen metabolism	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	valine metabolism	77.78	7 of 9
66794	palmitate biosynthesis	77.27	17 of 22
66794	sulfopterin metabolism	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	NAD metabolism	72.22	13 of 18
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	phenylalanine metabolism	69.23	9 of 13
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	serine metabolism	66.67	6 of 9
66794	formaldehyde oxidation	66.67	2 of 3
66794	glycolysis	64.71	11 of 17
66794	d-xylose degradation	63.64	7 of 11
66794	ketogluconate metabolism	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	gluconeogenesis	62.5	5 of 8
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	lipoate biosynthesis	60	3 of 5
66794	reductive acetyl coenzyme A pathway	57.14	4 of 7
66794	pyrimidine metabolism	55.56	25 of 45
66794	CO2 fixation in Crenarchaeota	55.56	5 of 9
66794	d-mannose degradation	55.56	5 of 9
66794	purine metabolism	55.32	52 of 94
66794	non-pathway related	55.26	21 of 38
66794	leucine metabolism	53.85	7 of 13
66794	methionine metabolism	53.85	14 of 26
66794	vitamin B1 metabolism	53.85	7 of 13
66794	oxidative phosphorylation	51.65	47 of 91
66794	suberin monomers biosynthesis	50	1 of 2
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	coenzyme A metabolism	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	50	4 of 8
66794	degradation of pentoses	50	14 of 28
66794	butanoate fermentation	50	2 of 4
66794	glutamate and glutamine metabolism	50	14 of 28
66794	histidine metabolism	48.28	14 of 29
66794	alanine metabolism	48.28	14 of 29
66794	arginine metabolism	45.83	11 of 24
66794	proline metabolism	45.45	5 of 11
66794	tryptophan metabolism	44.74	17 of 38
66794	propanol degradation	42.86	3 of 7
66794	citric acid cycle	42.86	6 of 14
66794	lysine metabolism	42.86	18 of 42
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	tetrahydrofolate metabolism	42.86	6 of 14
66794	lipid metabolism	41.94	13 of 31
66794	glycine metabolism	40	4 of 10
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	flavin biosynthesis	40	6 of 15
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	Entner Doudoroff pathway	40	4 of 10
66794	isoprenoid biosynthesis	38.46	10 of 26
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	vitamin B6 metabolism	36.36	4 of 11
66794	metabolism of disaccharids	36.36	4 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
66794	glutathione metabolism	35.71	5 of 14
66794	IAA biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	cyanate degradation	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
66794	sphingosine metabolism	33.33	2 of 6
66794	sulfoquinovose degradation	33.33	1 of 3
66794	degradation of hexoses	33.33	6 of 18
66794	octane oxidation	33.33	1 of 3
66794	L-lactaldehyde degradation	33.33	1 of 3
66794	urea cycle	30.77	4 of 13
66794	propionate fermentation	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	tyrosine metabolism	28.57	4 of 14
66794	mevalonate metabolism	28.57	2 of 7
66794	lactate fermentation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	cysteine metabolism	22.22	4 of 18
66794	nitrate assimilation	22.22	2 of 9
66794	4-hydroxymandelate degradation	22.22	2 of 9
66794	heme metabolism	21.43	3 of 14

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Arthropoda	#Insecta
#Host Body-Site	#Gastrointestinal tract	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Host species
65189	Isolated from the gut of Xylocopa violacea (Carpenter solitary bee)	(44.526268, 10.994889)	Italy	ITA	Europe
67770	Gut samples of carpenter bees (Xylocopa violacea)		Italy	ITA	Europe	Xylocopa violacea

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM331563v1 assembly for Bifidobacterium aemilianum XV10	contig	GCA_003315635	2041614.3	2865982043	2493120	51.91

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65189	Bifidobacterium aemilianum strain XV10 16S ribosomal RNA gene, partial sequence	MH043276	1500		2493120

GC content

@ref	GC-content (mol%)	Method
67770	61.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM331563v1 assembly for Bifidobacterium aemilianum XV10
NCBI: GCA_003315635

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	92.71	no
125439	gram_stain	BacteriaNetⓘ	positive	81.17	no
125439	motility	BacteriaNetⓘ	no	87.16	no
125439	spore_formation	BacteriaNetⓘ	no	97.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Exploring the biodiversity of Bifidobacterium asteroides among honey bee microbiomes.	Lugli GA, Fontana F, Tarracchini C, Mancabelli L, Milani C, Turroni F, Ventura M.	Environ Microbiol	10.1111/1462-2920.16223	2022
Phylogeny	Bifidobacterium xylocopae sp. nov. and Bifidobacterium aemilianum sp. nov., from the carpenter bee (Xylocopa violacea) digestive tract.	Alberoni D, Gaggia F, Baffoni L, Modesto MM, Biavati B, Di Gioia D	Syst Appl Microbiol	10.1016/j.syapm.2018.11.005	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65189	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104956
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Bifidobacterium aemilianum (DSM 104956, LMG 30143, XV10)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003315635

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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