Name: Vibrio coralliirubri corallo1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158432

Type strain:

Species: Vibrio coralliirubri

Strain Designation: corallo1

Culture col. no.: DSM 27495, CIP 110630

Strain history: CIP <- 2013, I. Romano, Ist. Chimica Biomolecolare, CNR, Pozzuoli, Italy: strain Corallo1

NCBI tax ID(s): 1516159 (species)

SI-ID 407833

DSM 27495, CIP 110630

Section

Vibrio coralliirubri corallo1 is a mesophilic, Gram-negative, motile bacterium that was isolated from mucus layer of Corallium rubrum.

Gram-negative
motile
rod-shaped
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Vibrio*
	Species	**Vibrio coralliirubri**
	Full Scientific Name (LPSN)	Vibrio coralliirubri Poli et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #118750]	Gram stain	negative

[Ref.: #118750]	Cell shape	rod-shaped

[Ref.: #118750]	Motility	yes

Multimedia content

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

CIP Medium 13

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #65108]			growth	25 °C

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Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65108]	Sample type/isolated from	mucus layer of Corallium rubrum
[Ref.: #65108]	Geographic location (country and/or sea, region)	Naples, Procida island, Punta Pizzaco (40° 45' 02'' N, 14° 1' 31.5'' E)
[Ref.: #65108]	Country	Italy
[Ref.: #65108]	Country ISO 3 Code	ITA
[Ref.: #65108]	Continent	Europe

[Ref.: #118750]	Sample type/isolated from	Mucous layer of red coral
[Ref.: #118750]	Geographic location (country and/or sea, region)	Naples, Procida island, Punta Pizzaco
[Ref.: #118750]	Country	Italy
[Ref.: #118750]	Country ISO 3 Code	ITA
[Ref.: #118750]	Continent	Europe
[Ref.: #118750]	Isolation date	2012-12-03
* marker position based on {}

Isolation sources categories

#Host	#Invertebrates (Other)	#Cnidaria (Corals)
#Host Body Product	#Oral cavity and Airways	#Mucus

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HG942391 (>99% sequence identity) for Vibrio from Microbeatlas

Aquatic Samples	5115
Soil Samples	160
Animal Samples	960
Plant Samples	30
Total Samples	6265

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65108]	Vibrio sp. CIP 110630 partial 16S rRNA gene, strain CIP 110630	HG942391	1545	ENA	1472886 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Vibrio coralliirubri Corallo1	GCA_002156455	contig	GenBank	1516159 tax ID	*
[Ref.: #66792]	Vibrio coralliirubri DSM 27495	GCA_024347375	complete	GenBank	1516159 tax ID	*

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GC-content

44.5 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Vibrio coralliirubri DSM 27495 NCBI: GCA_024347375.1
[Ref.: #69480]	flagellated	yes	88.216	no
[Ref.: #69480]	gram-positive	no	98.896	no
[Ref.: #69480]	anaerobic	no	96.548	no
[Ref.: #69480]	aerobic	yes	84.985	no
[Ref.: #69480]	halophile	yes	63.871	no
[Ref.: #69480]	spore-forming	no	95.546	no
[Ref.: #69480]	motile	yes	91.873	no
[Ref.: #69480]	glucose-ferment	yes	87.188	no
[Ref.: #69480]	thermophile	no	99.648	yes
[Ref.: #69480]	glucose-util	yes	91.991	no

Availability in culture collections External links

[Ref.: #65108]

Culture collection no.

DSM 27495, CIP 110630

[Ref.: #111233]

SI-ID 407833

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vibrio coralliirubri sp. nov., a new species isolated from mucus of red coral (Corallium rubrum) collected at Procida island, Italy.	Poli A, Romano I, Mastascusa V, Buono L, Orlando P, Nicolaus B, Leone L, Hong KW, Chan KG, Goh KM, Pascual J	Antonie Van Leeuwenhoek	10.1007/s10482-017-1013-5	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65108

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27495

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#111233

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407833.1 )

#118750 Collection of Institut Pasteur ; Curators of the CIP; CIP 110630
* These data were automatically processed and therefore are not curated

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Vibrio coralliirubri DSM 27495

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