Name: Acidipropionibacterium virtanenii JS278
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158421

Type strain:

Species: Acidipropionibacterium virtanenii

Strain Designation: JS278

Culture col. no.: DSM 106790, VTT E-113202

Strain history: <- E. Storgards, VTT Technical Research Centre, Finland; VTT E-113202 <- H. Hakuli

NCBI tax ID(s): 2057246 (species)

SI-ID 403114

DSM 106790

Section

Acidipropionibacterium virtanenii JS278 is an anaerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from malted barley.

colony-forming
Gram-positive
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Propionibacteriaceae*
	Genus	*Acidipropionibacterium*
	Species	**Acidipropionibacterium virtanenii**
	Full Scientific Name (LPSN)	Acidipropionibacterium virtanenii Deptula et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #66688]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #66688]	Cell length	1-5 µm

[Ref.: #66688]	Cell width	0.7 µm

[Ref.: #66688]	Cell shape	rod-shaped

[Ref.: #69480]	Motility	no Confidence in %90.68

[Ref.: #66688]	Colony size	2-3 mm
[Ref.: #66688]	Colony color	cream-beige and change after 3 days to orange-brown
[Ref.: #66688]	Colony shape	circular
[Ref.: #66688]	Cultivation medium used	yeast-extract lactate agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65097]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #65097]

Culture medium growth

[Ref.: #65097]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65097]

Culture medium composition

expand / minimize

[Ref.: #66688]

Culture medium

yeast-extract lactate agar

[Ref.: #66688]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #65097]		growth	30 °C
[Ref.: #66688]		optimum	30 °C
[Ref.: #66688]	no	growth	42 °C
[Ref.: #66688]		growth	12-37 °C

[Ref.: #65097]	Temperature range	mesophilic
[Ref.: #66688]	Temperature range	mesophilic
[Ref.: #66688]	Temperature range	thermophilic

	Kind of pH		pH
[Ref.: #66688]	no	growth	4
[Ref.: #66688]	no	growth	4.5
[Ref.: #66688]		growth	5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #66688]	Oxygen tolerance	anaerobe
[Ref.: #66688]	Oxygen tolerance	aerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.989
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Salt		Salt conc.
[Ref.: #66688]	NaCl	growth	0-1.1	M
[Ref.: #66688]	NaCl	maximum	6.5	%(w/v)
[Ref.: #66688]	NaCl	optimum	0	M

[Ref.: #66688]	Observation	Cells are pleomorphic.
[Ref.: #66688]	Observation	In liquid cultures, pigmentation is observed when grown on lactic acid or turanose as a carbon source.
[Ref.: #66688]	Observation	The main fermentation end products are propionic and acetic acids in molar ratio 2.5, which is unaffected by the presence of oxygen.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66688]	amygdalin ChEBI	+/-	builds acid from
[Ref.: #66688]	arbutin ChEBI	+	builds acid from
[Ref.: #66688]	cellobiose ChEBI	+	builds acid from
[Ref.: #66688]	D-arabinose ChEBI	+	builds acid from
[Ref.: #66688]	D-arabitol ChEBI	+	builds acid from
[Ref.: #66688]	D-fructose ChEBI	+	builds acid from
[Ref.: #66688]	D-fucose ChEBI	-	builds acid from
[Ref.: #66688]	D-galactose ChEBI	+	builds acid from
[Ref.: #66688]	D-glucose ChEBI	+	builds acid from
[Ref.: #66688]	D-lyxose ChEBI	-	builds acid from
[Ref.: #66688]	D-mannitol ChEBI	+	builds acid from
[Ref.: #66688]	D-mannose ChEBI	+	builds acid from
[Ref.: #66688]	D-ribose ChEBI	+	builds acid from
[Ref.: #66688]	D-sorbitol ChEBI	+	builds acid from
[Ref.: #66688]	D-tagatose ChEBI	-	builds acid from
[Ref.: #66688]	D-xylose ChEBI	-	builds acid from
[Ref.: #66688]	erythritol ChEBI	+	builds acid from
[Ref.: #66688]	esculin ferric citrate	+	builds acid from
[Ref.: #66688]	galactitol ChEBI	-	builds acid from
[Ref.: #66688]	gentiobiose ChEBI	+	builds acid from
[Ref.: #66688]	glycerol ChEBI	+	builds acid from
[Ref.: #66688]	glycogen ChEBI	-	builds acid from
[Ref.: #66688]	inulin ChEBI	-	builds acid from
[Ref.: #66688]	L-arabinose ChEBI	+	builds acid from
[Ref.: #66688]	L-arabitol ChEBI	+	builds acid from
[Ref.: #66688]	L-fucose ChEBI	-	builds acid from
[Ref.: #66688]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #66688]	L-sorbose ChEBI	-	builds acid from
[Ref.: #66688]	L-xylose ChEBI	-	builds acid from
[Ref.: #66688]	lactose ChEBI	+	builds acid from
[Ref.: #66688]	maltose ChEBI	+	builds acid from
[Ref.: #66688]	melezitose ChEBI	-	builds acid from
[Ref.: #66688]	melibiose ChEBI	+	builds acid from
[Ref.: #66688]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #66688]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #66688]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #66688]	myo-inositol ChEBI	-	builds acid from
[Ref.: #66688]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #66688]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #66688]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #66688]	potassium gluconate ChEBI	+	builds acid from
[Ref.: #66688]	raffinose ChEBI	+	builds acid from
[Ref.: #66688]	ribitol ChEBI	+	builds acid from
[Ref.: #66688]	salicin ChEBI	+	builds acid from
[Ref.: #66688]	starch ChEBI	+	builds acid from
[Ref.: #66688]	sucrose ChEBI	+	builds acid from
[Ref.: #66688]	trehalose ChEBI	+	builds acid from
[Ref.: #66688]	turanose ChEBI	+	builds acid from
[Ref.: #66688]	xylitol ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #66688]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65097]	Sample type/isolated from	malted barley
[Ref.: #65097]	Geographic location (country and/or sea, region)	Lathi
[Ref.: #65097]	Country	Finland
[Ref.: #65097]	Country ISO 3 Code	FIN
[Ref.: #65097]	Continent	Europe

[Ref.: #66688]	Sample type/isolated from	finnish malted barley
[Ref.: #66688]	Country	Finland
[Ref.: #66688]	Country ISO 3 Code	FIN
[Ref.: #66688]	Continent	Europe
[Ref.: #66688]	Enrichment culture	yeast extract-sodium lactate medium
[Ref.: #66688]	Enrichment culture duration	7 days
[Ref.: #66688]	Enrichment culture temperature	30 ̊C
[Ref.: #66688]	Isolation/enrichment procedure	mixing 10 g barley with 90 ml Ringer's solution, incubated at 4°C for 30 min, and homogenized in Stomacher for 10 min. Serially diluted samples were plated on YEL agar (yeast extract-sodium lactate medium) and incubated anaerobically (O2 0 %, CO2 10 %, H2 10 %, N2 80 %; Anoxomat, Mart Microbiology) at 30°C for 7 days.
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Engineered	#Treatment	-
#Engineered	#Food production	#Beverage
#Engineered	#Food production	#Fermented

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66688]	Acidipropionibacterium sp. JS278 16S ribosomal RNA gene, partial sequence	MG596783	1527	ENA	2057246 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acidipropionibacterium virtanenii JS278	GCA_003325455	complete	GenBank	2057246 tax ID	*
[Ref.: #66792]	Acidipropionibacterium virtanenii JS278	2834914592	complete	JGI IMG/M	2057246 tax ID	*

[Ref.: #65097]	GC-content	68.4 mol%
[Ref.: #66688]	GC-content	68.4 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Acidipropionibacterium virtanenii JS278 NCBI: GCA_003325455.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acidipropionibacterium virtanenii JS278 NCBI: GCA_003325455.1
[Ref.: #69480]	flagellated	no	98.467	no
[Ref.: #69480]	gram-positive	yes	91.686	yes
[Ref.: #69480]	anaerobic	no	68.988	no
[Ref.: #69480]	aerobic	no	81.692	no
[Ref.: #69480]	halophile	no	95.387	yes
[Ref.: #69480]	spore-forming	no	87.85	no
[Ref.: #69480]	glucose-util	yes	90.133	no
[Ref.: #69480]	thermophile	no	91.384	no
[Ref.: #69480]	motile	no	93.483	no
[Ref.: #69480]	glucose-ferment	yes	69.362	no

Availability in culture collections External links

[Ref.: #65097]

Culture collection no.

DSM 106790, VTT E-113202

[Ref.: #111224]

SI-ID 403114

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Acidipropionibacterium virtanenii sp. nov., isolated from malted barley.	Deptula P, Smolander OP, Laine P, Roberts RJ, Edelmann M, Peltola P, Piironen V, Paulin L, Storgards E, Savijoki K, Laitila A, Auvinen P, Varmanen P	Int J Syst Evol Microbiol	10.1099/ijsem.0.002965	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65097

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106790

#66688

Paulina Deptula, Olli-Pekka Smolander, Pia Laine, Richard J. Roberts, Minnamari Edelmann, Petri Peltola, Vieno Piironen, Lars Paulin, Erna Storgards, Kirsi Savijoki, Arja Laitila, Petri Auvinen, Pekka Varmanen: Acidipropionibacterium virtanenii sp. nov., isolated from malted barley. IJSEM 68: 3175 - 3183 2018 ( DOI 10.1099/ijsem.0.002965 , PubMed 30156530 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111224

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403114.1 )

* These data were automatically processed and therefore are not curated

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