Name: Listeria goaensis 88L
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158422

Type strain:

Species: Listeria goaensis

Strain Designation: 88L, ILCC801

Culture col. no.: DSM 29886, KCTC 33909, MCC 3285, LCC 801

Strain history: <- T. Hain, Justus-Liebig-Universität, Giessen, Germany

NCBI tax ID(s): 1649188 (species)

Section

Listeria goaensis 88L is a Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from sediment of estuarine mangrove swamp.

colony-forming
Gram-positive
rod-shaped
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Listeriaceae*
	Genus	*Listeria*
	Species	**Listeria goaensis**
	Full Scientific Name (LPSN)	Listeria goaensis Doijad et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #66701]	Gram stain	positive

[Ref.: #66701]	Cell shape	rod-shaped

[Ref.: #66701]	Motility	no

[Ref.: #66701]	Type of hemolysis	alpha
[Ref.: #66701]	Hemolysis ability	1
[Ref.: #66701]	Colony size	1.5 mm
[Ref.: #66701]	Colony color	white
[Ref.: #66701]	Colony shape	circular
[Ref.: #66701]	Incubation period	1 day
[Ref.: #66701]	Cultivation medium used	BHI agar

[Ref.: #66701]	Colony color	greenish grey
[Ref.: #66701]	Incubation period	1-2 days
[Ref.: #66701]	Cultivation medium used	PALCAM agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66701]

Culture medium

BHI agar

[Ref.: #66701]

Culture medium growth

[Ref.: #66701]

Culture medium

PALCAM agar

[Ref.: #66701]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #66701]			growth	18-42 °C
[Ref.: #66701]			optimum	30-37 °C

[Ref.: #66701]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #66701]			optimum	7
[Ref.: #66701]			growth	5.5-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #66701]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66701]		NaCl		growth	0-12.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66701]	D-arabitol ChEBI	+	builds acid from
[Ref.: #66701]	D-glucose ChEBI	+	builds acid from
[Ref.: #66701]	D-mannitol ChEBI	-	builds acid from
[Ref.: #66701]	D-ribose ChEBI	-	builds acid from
[Ref.: #66701]	D-xylose ChEBI	+	builds acid from
[Ref.: #66701]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #66701]	lactose ChEBI	+	builds acid from
[Ref.: #66701]	maltose ChEBI	+	builds acid from
[Ref.: #66701]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #66701]	nitrate ChEBI	-	reduction

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #66701]		nitrate ChEBI	-

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #66701]		catalase	+	1.11.1.6
[Ref.: #66701]		cytochrome oxidase	-	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66701]	Sample type/isolated from	sediment of estuarine mangrove swamp
[Ref.: #66701]	Geographic location (country and/or sea, region)	river Mandovi in Goa
[Ref.: #66701]	Country	India
[Ref.: #66701]	Country ISO 3 Code	IND
[Ref.: #66701]	Continent	Asia
[Ref.: #66701]	Geographic location	15.5045°/73.8434°
[Ref.: #66701]	Enrichment culture	University of Vermont Modification Medium
[Ref.: #66701]	Enrichment culture duration	26 h
[Ref.: #66701]	Enrichment culture temperature	30 ̊C
[Ref.: #66701]	Isolation/enrichment procedure	225 ml University of Vermont Modification Medium Ibroth was added to the sediment (25±1 g) samples and incubated at 30°C for 24±2 h. Secondary enrichment was made by transferring 0.1 ml UVM I enrichment to 10ml UVM II broth. A loop full (10 µl) from the UVM II broth was then streaked onto polymyxin - acriflavin -lithium chloride - ceftazidime -aesculin - mannitol (PALCAM) agar plates and incubated at 35°C for 24 - 48 h. The inoculated UVM II was incubated at 30 C for 24±2 h
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Estuary
#Environmental	#Aquatic	#Mangrove
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KR363105 (>99% sequence identity) for Listeria from Microbeatlas

Aquatic Samples	98
Soil Samples	48
Animal Samples	584
Plant Samples	58
Total Samples	788

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66701]	Listeria sp. ILCC801 16S ribosomal RNA gene, partial sequence	KR363105	1539	ENA	1649188 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Listeria goaensis ILCC801	GCA_900186125	contig	GenBank	1649188 tax ID	*

[Ref.: #66701]

GC-content

40.26 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Listeria goaensis ILCC801 NCBI: GCA_900186125.1
[Ref.: #69480]	motile	no	86.121	no
[Ref.: #69480]	flagellated	no	92.905	yes
[Ref.: #69480]	gram-positive	yes	95.792	yes
[Ref.: #69480]	anaerobic	no	94.622	no
[Ref.: #69480]	aerobic	no	91.414	no
[Ref.: #69480]	halophile	yes	66.453	no
[Ref.: #69480]	spore-forming	no	88.724	yes
[Ref.: #69480]	thermophile	no	99.623	yes
[Ref.: #69480]	glucose-util	yes	84.275	no
[Ref.: #69480]	glucose-ferment	yes	65.102	no

Availability in culture collections External links

[Ref.: #65098]

Culture collection no.

DSM 29886, KCTC 33909, MCC 3285, LCC 801

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Listeria goaensis sp. nov.	Doijad SP, Poharkar KV, Kale SB, Kerkar S, Kalorey DR, Kurkure NV, Rawool DB, Malik SVS, Ahmad RY, Hudel M, Chaudhari SP, Abt B, Overmann J, Weigel M, Hain T, Barbuddhe SB, Chakraborty T	Int J Syst Evol Microbiol	10.1099/ijsem.0.002980	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65098

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29886

#66701

Swapnil P. Doijad, Krupali V. Poharkar, Satyajit B. Kale, Savita Kerkar, Dewanand R. Kalorey, Nitin V. Kurkure, Deepak B. Rawool, Satya Veer Singh Malik, Rafed Yassin Ahmad,Martina Hudel, Sandeep P. Chaudhari, Birte Abt, Jörg Overmann, Markus Weigel,Torsten Hain, Sukhadeo B. Barbuddhe,Trinad Chakraborty: Listeria goaensis sp. nov.. IJSEM 68: 3285 - 3291 2018 ( DOI 10.1099/ijsem.0.002980 , PubMed 30156532 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Listeria goaensis ILCC801

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