Actinomadura barringtoniae (DSM 108647, NBRC 113074, TBRC 7225)

Name: Actinomadura barringtoniae (DSM 108647, NBRC 113074, TBRC 7225)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158373

Type strain

Culture col. no. DSM 108647 NBRC 113074 TBRC 7225 GKU 128

NCBI tax ID(s) 1427535

Special Collections DSMZ Literature strains

History <- NBRC; NBRC 113074 <- H. Rachniyom, BIOTEC; GKU 128

Links

Actinomadura barringtoniae DSM 108647 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from root of Indian oak tree Barringtonia acutangula Gaertn..

spore-forming Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 398387

TBRC 7225,NBRC 113074,DSM 108647

@ref 20215

Last LPSN update 2026-02-09 11:38:18

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Thermomonosporaceae

Genus Actinomadura

Species Actinomadura barringtoniae

Full scientific name Actinomadura barringtoniae Rachniyom et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Motility
65467	positive

Pigmentation

@ref	Production	Name
65467		melanin pigment

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
65049	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
65049	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
65049	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
65049	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
65049	BHI MEDIUM (DSMZ Medium 215)	Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
65467	ISP 2 medium
65467	ISP 4 medium
65467	ISP 5 medium
65467	ISP 7 medium

Culture temp

@ref	Growth	Type	Temperature (°C)
65049	positive	growth	28
65467	positive	optimum	24-32

Culture pH

@ref	Ability	Type	PH
65467	positive	optimum	7

Physiology and metabolism

Oxygen tolerance

65467

Oxygen toleranceaerobe

Spore formation

65467

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65467	NaCl	positive	growth	0-5 %(w/v)

Observation

@ref	Observation
65467	forms extensively branched substrate and aerial mycelia
65467	spores are smooth and oval to cylindrical in shaped (0.6x0.8µm in size)
65467	antique gold pigment is produced on ISP 2 medium
65467	cell-wall peptidoglycan contains meso-diaminopimelic acid and the whole-cell sugars are glucose, madurose, mannose, rhamnose and ribose
65467	N-acyl type of muramic acid is acetyl
65467	mycolic acids are absent
65467	major phospholipids are diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol and phosphatidylinositolmannoside
65467	predominant menaquinone is MK-9(H6), with minor amounts of MK-9(H8), MK-9(H0) and MK-9(H4)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65467	48095 ChEBI	(-)-D-fructose	-	builds acid from
65467	48095 ChEBI	(-)-D-fructose	+	carbon source
65467	16708 ChEBI	adenine	+	assimilation
65467	28161 ChEBI	beta-D-xylose	-	builds acid from
65467		casein	+	assimilation
65467	17634 ChEBI	D-glucose	-	builds acid from
65467	17634 ChEBI	D-glucose	+	carbon source
65467	16899 ChEBI	D-mannitol	+	builds acid from
65467	16899 ChEBI	D-mannitol	+	carbon source
65467	16024 ChEBI	D-mannose	-	builds acid from
65467	16024 ChEBI	D-mannose	+	carbon source
65467	17924 ChEBI	D-sorbitol	-	builds acid from
65467	17924 ChEBI	D-sorbitol	-	carbon source
65467	65327 ChEBI	D-xylose	-	carbon source
65467	5291 ChEBI	gelatin	+	assimilation
65467	17754 ChEBI	glycerol	-	builds acid from
65467	17754 ChEBI	glycerol	+	carbon source
65467	17368 ChEBI	hypoxanthine	+	assimilation
65467	30849 ChEBI	L-arabinose	+	builds acid from
65467	30849 ChEBI	L-arabinose	+	carbon source
65467	16467 ChEBI	L-arginine	+	nitrogen source
65467	17196 ChEBI	L-asparagine	+	nitrogen source
65467	17561 ChEBI	L-cysteine	+	nitrogen source
65467	15971 ChEBI	L-histidine	+	nitrogen source
65467	17203 ChEBI	L-proline	+	nitrogen source
65467	62345 ChEBI	L-rhamnose	-	builds acid from
65467	62345 ChEBI	L-rhamnose	+	carbon source
65467	17895 ChEBI	L-tyrosine	+	assimilation
65467	16414 ChEBI	L-valine	+	nitrogen source
65467	17306 ChEBI	maltose	-	builds acid from
65467	17306 ChEBI	maltose	+	carbon source
65467		milk	-	assimilation
65467	17268 ChEBI	myo-inositol	+	carbon source
65467	17632 ChEBI	nitrate	+	reduction
65467	63043 ChEBI	potassium nitrate	+	nitrogen source
65467	16634 ChEBI	raffinose	-	builds acid from
65467	16634 ChEBI	raffinose	+	carbon source
65467	15963 ChEBI	ribitol	+	carbon source
65467	53258 ChEBI	sodium citrate	-	assimilation
65467	28017 ChEBI	starch	+	assimilation
65467	17992 ChEBI	sucrose	+	builds acid from
65467	17992 ChEBI	sucrose	+	carbon source
65467	27082 ChEBI	trehalose	+	carbon source
65467	53424 ChEBI	tween 20	+	assimilation
65467	53426 ChEBI	tween 80	+	assimilation
65467	16199 ChEBI	urea	-	assimilation
65467	15318 ChEBI	xanthine	-	assimilation

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.
65467	2652	amphotericin b	50 µg/mL
65467	28971	ampicillin	100 µg/mL
65467	27641	cycloheximide	50 µg/mL
65467	18208	penicillin g	2.5 Unit (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
65467	15138 ChEBI	sulfide

Enzymes

@ref	Value	Activity	Ec
65467	acid phosphatase	+	3.1.3.2
65467	alkaline phosphatase	+	3.1.3.1
65467	alpha-chymotrypsin	+	3.4.21.1
65467	alpha-fucosidase	-	3.2.1.51
65467	alpha-galactosidase	+	3.2.1.22
65467	alpha-glucosidase	+	3.2.1.20
65467	alpha-mannosidase	+	3.2.1.24
65467	beta-galactosidase	+	3.2.1.23
65467	beta-glucosidase	+	3.2.1.21
65467	beta-glucuronidase	-	3.2.1.31
65467	catalase	+	1.11.1.6
65467	cystine arylamidase	+	3.4.11.3
65467	cytochrome oxidase	+	1.9.3.1
65467	esterase (C 4)	+
65467	esterase Lipase (C 8)	+
65467	leucine arylamidase	+	3.4.11.1
65467	lipase	-
65467	N-acetyl-beta-glucosaminidase	+	3.2.1.52
65467	naphthol-AS-BI-phosphohydrolase	+
65467	trypsin	+	3.4.21.4
65467	valine arylamidase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Plant	#Root (Rhizome)
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture duration	Enrichment culture temperature	Isolation date	Isolation procedure
65049	root of Indian oak tree Barringtonia acutangula (L.) Gaertn.	Chantaburi province, Khao Khitchakut district	Thailand	THA	Asia
65467	the root of an Indian oak tree [Barringtonia acutangula (L.) Gaertn.]	Khao Khitchakut district, Chantaburi province	Thailand	THA	Asia	3-4 weeks	28	been surface	was isolated from excised roots that had

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM1757350v1 assembly for Actinomadura barringtoniae GKU 128	contig	GCA_017573505	1427535.3	3002998708	1427535	53.41

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65049	Actinomadura sp. GKU 128 16S ribosomal RNA gene, partial sequence	KF667497	1497		1427535

GC content

@ref	GC-content (mol%)	Method
65467	70.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Metagenomics-based exploration of key soil microorganisms contributing to continuously planted Casuarina equisetifolia growth inhibition and their interactions with soil nutrient transformation.	Wang Y, Lin S, Li J, Jia X, Hu M, Cai Y, Cheng P, Li M, Chen Y, Lin W, Wang H, Wu Z.	Front Plant Sci	10.3389/fpls.2023.1324184	2023
Phylogeny	Actinomadura violacea sp. nov., a madurastatin A1-producing strain isolated from lichen in Thailand.	Kanchanasin P, Phongsopitanun W, Yuki M, Kudo T, Ohkuma M, Nakashima T, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.005126	2021
Phylogeny	Actinomadura barringtoniae sp. nov., an endophytic actinomycete isolated from the roots of Barringtonia acutangula (L.) Gaertn.	Rachniyom H, Matsumoto A, Inahashi Y, Take A, Takahashi Y, Thamchaipenet A	Int J Syst Evol Microbiol	10.1099/ijsem.0.002714	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65049	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108647
#65467	Hathairat Rachniyom, Atsuko Matsumoto, Yuki Inahashi, Akira Take, Yoko Takahashi, Arinthip Thamchaipenet: Actinomadura barringtoniae sp. nov., an endophytic actinomycete isolated from the roots of Barringtonia acutangula (L.) Gaertn.. IJSEM 68: 1584 - 1590 2018 ( DOI 10.1099/ijsem.0.002714 , PubMed 29543147 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinomadura barringtoniae (DSM 108647, NBRC 113074, TBRC 7225)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_017573505

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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