Name: Glycomyces anabasis DSM 46768
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158364

Type strain:

Species: Glycomyces anabasis

Culture col. no.: DSM 46768, JCM 30088, KCTC 29495, EGI 6500139

Strain history: <- Wenjun Li, Sun Yat-Sen Univ.

NCBI tax ID(s): 1840412 (species)

SI-ID 401603

DSM 46768

Section

Glycomyces anabasis DSM 46768 is an aerobe, spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from root of Anabasis aphylla L..

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Glycomycetales*
	Family	*Glycomycetaceae*
	Genus	*Glycomyces*
	Species	**Glycomyces anabasis**
	Full Scientific Name (LPSN)	Glycomyces anabasis Zhang et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65543]	Gram stain	positive

[Ref.: #65543]	Multicellular complex forming ability	yes
[Ref.: #65543]	Multicellular complex name	aerial mycelium
[Ref.: #65543]	Multicellular complex color	vivid yellowish pink
[Ref.: #65543]	Medium Name (multicellularity)	ISP 2

[Ref.: #65543]	Multicellular complex forming ability	yes
[Ref.: #65543]	Multicellular complex name	substrate mycelium
[Ref.: #65543]	Multicellular complex color	strong olive green
[Ref.: #65543]	Medium Name (multicellularity)	ISP 2

[Ref.: #65543]	Multicellular complex forming ability	yes
[Ref.: #65543]	Multicellular complex name	aerial mycelium
[Ref.: #65543]	Multicellular complex color	deep olive green
[Ref.: #65543]	Medium Name (multicellularity)	ISP 3

[Ref.: #65543]	Multicellular complex forming ability	yes
[Ref.: #65543]	Multicellular complex name	substrate mycelium
[Ref.: #65543]	Multicellular complex color	deep olive green
[Ref.: #65543]	Medium Name (multicellularity)	ISP 3

[Ref.: #65543]	Multicellular complex forming ability	yes
[Ref.: #65543]	Multicellular complex name	substrate mycelium
[Ref.: #65543]	Multicellular complex color	strong olive green
[Ref.: #65543]	Medium Name (multicellularity)	ISP 4

[Ref.: #65543]	Multicellular complex forming ability	yes
[Ref.: #65543]	Multicellular complex name	aerial mycelium
[Ref.: #65543]	Multicellular complex color	strong olive green
[Ref.: #65543]	Medium Name (multicellularity)	ISP 4

[Ref.: #65543]	Multicellular complex forming ability	yes
[Ref.: #65543]	Multicellular complex name	substrate mycelium
[Ref.: #65543]	Multicellular complex color	yellowish white
[Ref.: #65543]	Medium Name (multicellularity)	ISP 5

[Ref.: #65543]	Multicellular complex forming ability	yes
[Ref.: #65543]	Multicellular complex name	aerial mycelium
[Ref.: #65543]	Multicellular complex color	strong olive green
[Ref.: #65543]	Medium Name (multicellularity)	ISP 5

[Ref.: #65543]	Multicellular complex forming ability	yes
[Ref.: #65543]	Multicellular complex name	substrate mycelium
[Ref.: #65543]	Multicellular complex color	strong olive green
[Ref.: #65543]	Medium Name (multicellularity)	NA

[Ref.: #65543]	Multicellular complex forming ability	yes
[Ref.: #65543]	Multicellular complex name	aerial mycelium
[Ref.: #65543]	Multicellular complex color	strong olive green
[Ref.: #65543]	Medium Name (multicellularity)	NA

[Ref.: #65543]	Multicellular complex forming ability	yes
[Ref.: #65543]	Multicellular complex name	substrate mycelium
[Ref.: #65543]	Multicellular complex color	strong olive green
[Ref.: #65543]	Medium Name (multicellularity)	Czapek's agar

[Ref.: #65543]	Multicellular complex forming ability	yes
[Ref.: #65543]	Multicellular complex name	aerial mycelium
[Ref.: #65543]	Multicellular complex color	deep olive green
[Ref.: #65543]	Medium Name (multicellularity)	Czapek's agar

[Ref.: #65543]	Multicellular complex forming ability	yes
[Ref.: #65543]	Multicellular complex name	substrate mycelium
[Ref.: #65543]	Multicellular complex color	strong olive green
[Ref.: #65543]	Medium Name (multicellularity)	potato-dextrose-agar

[Ref.: #65543]	Multicellular complex forming ability	yes
[Ref.: #65543]	Multicellular complex name	aerial mycelium
[Ref.: #65543]	Multicellular complex color	strong olive green
[Ref.: #65543]	Medium Name (multicellularity)	potato-dextrose-agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65040]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #65040]

Culture medium growth

[Ref.: #65040]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65040]

Culture medium composition

expand / minimize

[Ref.: #65040]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #65040]

Culture medium growth

[Ref.: #65040]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65040]

Culture medium composition

expand / minimize

[Ref.: #65543]

Culture medium

ISP 3

[Ref.: #65543]

Culture medium growth

[Ref.: #65543]

Culture medium

ISP 4

[Ref.: #65543]

Culture medium growth

[Ref.: #65543]

Culture medium

Czapek's agar

[Ref.: #65543]

Culture medium growth

[Ref.: #65543]

Culture medium

Nutrient agar (NA)

[Ref.: #65543]

Culture medium growth

[Ref.: #65543]

Culture medium

ISP 2

[Ref.: #65543]

Culture medium growth

[Ref.: #65543]

Culture medium

potato-dextrose-agar

[Ref.: #65543]

Culture medium growth

[Ref.: #65543]

Culture medium

ISP 5

[Ref.: #65543]

Culture medium growth

		Temperature
[Ref.: #65040]	growth	28 °C
[Ref.: #65543]	growth	15-40 °C
[Ref.: #65543]	optimum	30 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #65040]	Temperature range	mesophilic
[Ref.: #65543]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65543]			optimum	7.0-8.0
[Ref.: #65543]			growth	6.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65543]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #65543]	Spore description	rod-like
[Ref.: #65543]	Ability of spore formation	yes

[Ref.: #65543]

Halophily / tolerance level

moderately halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65543]		NaCl		growth	0-10	%(w/v)
[Ref.: #65543]		NaCl		optimum	4-6	%(w/v)

[Ref.: #67770]

Observation

quinones: MK-11, MK-11(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65543]	casein	-	hydrolysis
[Ref.: #65543]	cellobiose ChEBI	-	carbon source
[Ref.: #65543]	cellulose ChEBI	+	hydrolysis
[Ref.: #65543]	D-fructose ChEBI	+	carbon source
[Ref.: #65543]	D-galactose ChEBI	+	carbon source
[Ref.: #65543]	D-glucose ChEBI	-	carbon source
[Ref.: #65543]	D-mannose ChEBI	-	carbon source
[Ref.: #65543]	D-ribose ChEBI	-	carbon source
[Ref.: #65543]	D-sorbitol ChEBI	-	carbon source
[Ref.: #65543]	D-xylose ChEBI	-	carbon source
[Ref.: #65543]	glycerol ChEBI	-	carbon source
[Ref.: #65543]	glycine ChEBI	-	nitrogen source
[Ref.: #65543]	L-arabinose ChEBI	-	carbon source
[Ref.: #65543]	L-arginine ChEBI	+	nitrogen source
[Ref.: #65543]	L-aspartate ChEBI	+	nitrogen source
[Ref.: #65543]	L-cystine ChEBI	+	nitrogen source
[Ref.: #65543]	L-glutamate ChEBI	+	nitrogen source
[Ref.: #65543]	L-histidine ChEBI	+	nitrogen source
[Ref.: #65543]	L-isoleucine ChEBI	+	nitrogen source
[Ref.: #65543]	L-lysine ChEBI	+	nitrogen source
[Ref.: #65543]	L-methionine ChEBI	+	nitrogen source
[Ref.: #65543]	L-phenylalanine ChEBI	-	nitrogen source
[Ref.: #65543]	L-rhamnose ChEBI	+	carbon source
[Ref.: #65543]	L-serine ChEBI	-	nitrogen source
[Ref.: #65543]	L-threonine ChEBI	+	nitrogen source
[Ref.: #65543]	L-tryptophan ChEBI	+	nitrogen source
[Ref.: #65543]	L-valine ChEBI	+	nitrogen source
[Ref.: #65543]	lactate ChEBI	+	carbon source
[Ref.: #65543]	melibiose ChEBI	-	carbon source
[Ref.: #65543]	myo-inositol ChEBI	-	carbon source
[Ref.: #65543]	nitrate ChEBI	-	reduction
[Ref.: #65543]	raffinose ChEBI	-	carbon source
[Ref.: #65543]	starch ChEBI	+	hydrolysis
[Ref.: #65543]	trehalose ChEBI	-	carbon source
[Ref.: #65543]	tween 20 ChEBI	+	hydrolysis
[Ref.: #65543]	tween 40 ChEBI	+	hydrolysis
[Ref.: #65543]	tween 60 ChEBI	+	hydrolysis
[Ref.: #65543]	tween 80 ChEBI	+	hydrolysis
[Ref.: #65543]	xylitol ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65543]		hydrogen sulfide ChEBI	no

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #65543]		catalase	+	1.11.1.6
[Ref.: #65543]		cytochrome oxidase	+	1.9.3.1

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65543]

Fatty acid	Percentage
C17:0 anteiso	40.4
C15:0 anteiso	20.2
C16:0 iso	18.4
C15:0 iso	10
C17:1 anteiso A	5.4
C16:1 iso G	1.9
C17:0 iso	1.8
C16:0	1.2
C14:0 iso	0.4
C17:0	0.2
C14:0	0.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65040]	Sample type/isolated from	root of Anabasis aphylla L.
[Ref.: #65040]	Geographic location (country and/or sea, region)	Xinjiang Province
[Ref.: #65040]	Country	China
[Ref.: #65040]	Country ISO 3 Code	CHN
[Ref.: #65040]	Continent	Asia

[Ref.: #65543]	Sample type/isolated from	surface-sterilized roots of Anabasis aphylla
[Ref.: #65543]	Geographic location (country and/or sea, region)	Xinjiang
[Ref.: #65543]	Country	China
[Ref.: #65543]	Country ISO 3 Code	CHN
[Ref.: #65543]	Continent	Asia
[Ref.: #65543]	Enrichment culture	tapwater-yeast exract agar
[Ref.: #65543]	Enrichment culture composition	supplemented with 3 %(w/v) NaCl
[Ref.: #65543]	Enrichment culture duration	3 weeks

[Ref.: #67770]	Sample type/isolated from	Surface-sterilized roots of Anabasis aphylla L.
[Ref.: #67770]	Host species	Anabasis aphylla
[Ref.: #67770]	Geographic location (country and/or sea, region)	Xinjiang, northwest China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From the surface-sterilized roots of Anabasis aphylla L.
[Ref.: #67771]	Geographic location (country and/or sea, region)	collected from Xinjiang
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65040]	Glycomyces anabasis strain EGI 6500139 16S ribosomal RNA gene, partial sequence	KX119421	1553	ENA	1840412 tax ID

[Ref.: #67770]

GC-content

70.4 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #65040]

Culture collection no.

DSM 46768, JCM 30088, KCTC 29495, EGI 6500139

[Ref.: #111169]

SI-ID 401603

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Glycomyces salinus sp. nov., an actinomycete isolated from a hypersaline habitat.	Li R, Jiang GQ, Wang Y, Chen YG, Zhou EM, Tang SK	Arch Microbiol	10.1007/s00203-021-02510-4	2021	*
Phylogeny	Glycomyces anabasis sp. nov., a novel endophytic actinobacterium isolated from roots of Anabasis aphylla L.	Zhang YG, Wang HF, Alkhalifah DHM, Xiao M, Zhou XK, Liu YH, Hozzein WN, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002668	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65040

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46768

#65543

Yong-Guang Zhang, Hong-Fei Wang, Dalal Hussien M. Alkhalifah, Min Xiao, Xing-Kui Zhou, Yong-Hong Liu, Wael N. Hozzein and Wen-Jun Li: Glycomyces anabasis sp. nov., a novel endophytic actinobacterium isolated from roots of Anabasis aphylla L.. IJSEM 68: 1285 - 1290 2018 ( DOI 10.1099/ijsem.0.002668 , PubMed 29485399 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#111169

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401603.1 )

* These data were automatically processed and therefore are not curated

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