Strain identifier
BacDive ID: 158364
Type strain:
Species: Glycomyces anabasis
Strain history: <- Wenjun Li, Sun Yat-Sen Univ.
NCBI tax ID(s): 1840412 (species)
General
@ref: 65040
BacDive-ID: 158364
DSM-Number: 46768
keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive
description: Glycomyces anabasis DSM 46768 is an aerobe, spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from root of Anabasis aphylla L..
NCBI tax id
- NCBI tax id: 1840412
- Matching level: species
strain history
@ref | history |
---|---|
65040 | <- W.-J. Li, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; EGI 6500139 <- H.-F. Wang, Chinese Academy of Science |
67770 | W.-J. Li EGI 6500139. |
67771 | <- Wenjun Li, Sun Yat-Sen Univ. |
doi: 10.13145/bacdive158364.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Glycomycetales
- family: Glycomycetaceae
- genus: Glycomyces
- species: Glycomyces anabasis
- full scientific name: Glycomyces anabasis Zhang et al. 2018
@ref: 65040
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Glycomycetaceae
genus: Glycomyces
species: Glycomyces anabasis
full scientific name: Glycomyces anabasis Zhang et al. 2018
type strain: yes
Morphology
cell morphology
- @ref: 65543
- gram stain: positive
multicellular morphology
@ref | forms multicellular complex | complex name | complex color | medium name |
---|---|---|---|---|
65543 | yes | aerial mycelium | vivid yellowish pink | ISP 2 |
65543 | yes | substrate mycelium | strong olive green | ISP 2 |
65543 | yes | aerial mycelium | deep olive green | ISP 3 |
65543 | yes | substrate mycelium | deep olive green | ISP 3 |
65543 | yes | substrate mycelium | strong olive green | ISP 4 |
65543 | yes | aerial mycelium | strong olive green | ISP 4 |
65543 | yes | substrate mycelium | yellowish white | ISP 5 |
65543 | yes | aerial mycelium | strong olive green | ISP 5 |
65543 | yes | substrate mycelium | strong olive green | NA |
65543 | yes | aerial mycelium | strong olive green | NA |
65543 | yes | substrate mycelium | strong olive green | Czapek's agar |
65543 | yes | aerial mycelium | deep olive green | Czapek's agar |
65543 | yes | substrate mycelium | strong olive green | potato-dextrose-agar |
65543 | yes | aerial mycelium | strong olive green | potato-dextrose-agar |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
65040 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
65040 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
65543 | ISP 3 | yes | ||
65543 | ISP 4 | yes | ||
65543 | Czapek's agar | yes | ||
65543 | Nutrient agar (NA) | yes | ||
65543 | ISP 2 | yes | ||
65543 | potato-dextrose-agar | yes | ||
65543 | ISP 5 | yes |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
65040 | positive | growth | 28 | mesophilic |
65543 | positive | growth | 15-40 | |
65543 | positive | optimum | 30 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
67771 | positive | growth | 28 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
65543 | positive | growth | 6.0-10.0 | alkaliphile |
65543 | positive | optimum | 7.0-8.0 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
65543 | aerobe |
67771 | aerobe |
spore formation
- @ref: 65543
- spore description: rod-like
- spore formation: yes
halophily
@ref | salt | growth | tested relation | concentration | halophily level |
---|---|---|---|---|---|
65543 | NaCl | positive | growth | 0-10 %(w/v) | |
65543 | NaCl | positive | optimum | 4-6 %(w/v) | moderately halophilic |
observation
- @ref: 67770
- observation: quinones: MK-11, MK-11(H2)
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
65543 | casein | - | hydrolysis | |
65543 | cellobiose | - | carbon source | 17057 |
65543 | cellulose | + | hydrolysis | 62968 |
65543 | D-fructose | + | carbon source | 15824 |
65543 | D-galactose | + | carbon source | 12936 |
65543 | D-glucose | - | carbon source | 17634 |
65543 | D-mannose | - | carbon source | 16024 |
65543 | D-ribose | - | carbon source | 16988 |
65543 | D-sorbitol | - | carbon source | 17924 |
65543 | xylitol | - | carbon source | 17151 |
65543 | D-xylose | - | carbon source | 65327 |
65543 | glycerol | - | carbon source | 17754 |
65543 | glycine | - | nitrogen source | 15428 |
65543 | L-arabinose | - | carbon source | 30849 |
65543 | L-arginine | + | nitrogen source | 16467 |
65543 | L-aspartate | + | nitrogen source | 29991 |
65543 | L-cystine | + | nitrogen source | 16283 |
65543 | L-glutamate | + | nitrogen source | 29985 |
65543 | L-histidine | + | nitrogen source | 15971 |
65543 | L-isoleucine | + | nitrogen source | 17191 |
65543 | L-lysine | + | nitrogen source | 18019 |
65543 | L-methionine | + | nitrogen source | 16643 |
65543 | L-phenylalanine | - | nitrogen source | 17295 |
65543 | L-rhamnose | + | carbon source | 62345 |
65543 | L-serine | - | nitrogen source | 17115 |
65543 | L-threonine | + | nitrogen source | 16857 |
65543 | L-tryptophan | + | nitrogen source | 16828 |
65543 | L-valine | + | nitrogen source | 16414 |
65543 | lactate | + | carbon source | 24996 |
65543 | melibiose | - | carbon source | 28053 |
65543 | myo-inositol | - | carbon source | 17268 |
65543 | nitrate | - | reduction | 17632 |
65543 | raffinose | - | carbon source | 16634 |
65543 | starch | + | hydrolysis | 28017 |
65543 | trehalose | - | carbon source | 27082 |
65543 | tween 20 | + | hydrolysis | 53424 |
65543 | tween 40 | + | hydrolysis | 53423 |
65543 | tween 60 | + | hydrolysis | 53425 |
65543 | tween 80 | + | hydrolysis | 53426 |
metabolite production
- @ref: 65543
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
65543 | cytochrome oxidase | + | 1.9.3.1 |
65543 | catalase | + | 1.11.1.6 |
fatty acid profile
fatty acids
@ref fatty acid percentage 65543 C14:0 0.1 65543 C16:0 1.2 65543 C17:0 0.2 65543 C16:1 iso G 1.9 65543 C17:1 anteiso A 5.4 65543 C14:0 iso 0.4 65543 C15:0 iso 10 65543 C15:0 anteiso 20.2 65543 C16:0 iso 18.4 65543 C17:0 iso 1.8 65543 C17:0 anteiso 40.4 - type of FA analysis: whole cell analysis
- incubation medium: TSB
- incubation temperature: 30
- incubation time: 5
- library/peak naming table: TSBA6
- system: MIS MIDI
- method/protocol: Sasser, 1990
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | enrichment culture | enrichment culture composition | enrichment culture duration | host species |
---|---|---|---|---|---|---|---|---|---|
65040 | root of Anabasis aphylla L. | Xinjiang Province | China | CHN | Asia | ||||
65543 | surface-sterilized roots of Anabasis aphylla | Xinjiang | China | CHN | Asia | tapwater-yeast exract agar | supplemented with 3 %(w/v) NaCl | 3 weeks | |
67770 | Surface-sterilized roots of Anabasis aphylla L. | Xinjiang, northwest China | China | CHN | Asia | Anabasis aphylla | |||
67771 | From the surface-sterilized roots of Anabasis aphylla L. | collected from Xinjiang | China | CHN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
#Host Body-Site | #Plant | #Root (Rhizome) |
Sequence information
16S sequences
- @ref: 65040
- description: Glycomyces anabasis strain EGI 6500139 16S ribosomal RNA gene, partial sequence
- accession: KX119421
- length: 1553
- database: ena
- NCBI tax ID: 1840412
GC content
- @ref: 67770
- GC-content: 70.4
- method: high performance liquid chromatography (HPLC)
External links
@ref: 65040
culture collection no.: DSM 46768, JCM 30088, KCTC 29495, EGI 6500139
straininfo link
- @ref: 111169
- straininfo: 401603
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 29485399 | Glycomyces anabasis sp. nov., a novel endophytic actinobacterium isolated from roots of Anabasis aphylla L. | Zhang YG, Wang HF, Alkhalifah DHM, Xiao M, Zhou XK, Liu YH, Hozzein WN, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002668 | 2018 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, Chenopodiaceae/*microbiology, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Glycolipids/chemistry, Phospholipids/chemistry, *Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/chemistry | Transcriptome |
Phylogeny | 34373934 | Glycomyces salinus sp. nov., an actinomycete isolated from a hypersaline habitat. | Li R, Jiang GQ, Wang Y, Chen YG, Zhou EM, Tang SK | Arch Microbiol | 10.1007/s00203-021-02510-4 | 2021 | *Actinobacteria/genetics, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Ecosystem, Fatty Acids/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2 | Transcriptome |
Reference
@id | authors | title | doi/url | catalogue | journal | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
65040 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-46768 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46768) | |||
65543 | Yong-Guang Zhang, Hong-Fei Wang, Dalal Hussien M. Alkhalifah, Min Xiao, Xing-Kui Zhou, Yong-Hong Liu, Wael N. Hozzein and Wen-Jun Li | Glycomyces anabasis sp. nov., a novel endophytic actinobacterium isolated from roots of Anabasis aphylla L. | 10.1099/ijsem.0.002668 | IJSEM 68: 1285-1290 2018 | 29485399 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
111169 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401603.1 |