Name: Acidiferrobacter sp. SPIII/3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158294

Type strain:

Species: Acidiferrobacter sp.

Strain Designation: SPIII/3

Culture col. no.: DSM 27195

Strain history: <- Ch. Thyssen, Univ. Duisburg-Essen, Germany; SPIII/3 <- W. Sand {1995}

NCBI tax ID(s): 1872107 (species)

SI-ID 403300

DSM 27195

Section

Acidiferrobacter sp. SPIII/3 is a mesophilic, Gram-negative bacterium that was isolated from surface exposed pyrite vein.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Acidiferrobacterales*
	Family	*Acidiferrobacteraceae*
	Genus	*Acidiferrobacter*
	Full Scientific Name (LPSN)	Acidiferrobacter Hallberg et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.999

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64954]

Culture medium

LEPTOSPIRILLUM (HH) MEDIUM (DSMZ Medium 882)

[Ref.: #64954]

Culture medium growth

[Ref.: #64954]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64954]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #64954]			growth	28 °C

[Ref.: #64954]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64954]	Sample type/isolated from	surface exposed pyrite vein
[Ref.: #64954]	Geographic location (country and/or sea, region)	Murcia, La Union
[Ref.: #64954]	Country	Spain
[Ref.: #64954]	Country ISO 3 Code	ESP
[Ref.: #64954]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Geologic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC128649 (>99% sequence identity) for Acidiferrobacter thiooxydans subclade from Microbeatlas

Aquatic Samples	377
Soil Samples	214
Animal Samples	36
Plant Samples	14
Total Samples	641

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64954]	Acidiferrobacter sp. SPIII_3 16S ribosomal RNA gene, partial sequence	KC128649	1457	ENA	1281578 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acidiferrobacter sp. SPIII_3	GCA_003184265	complete	GenBank	1281578 tax ID	*
[Ref.: #66792]	Acidiferrobacter sp. SPIII_3	1281578.45	complete	PATRIC	1281578 tax ID	*
[Ref.: #66792]	Acidiferrobacter sp. SPIII_3	2833647300	complete	JGI IMG/M	1281578 tax ID	*

[Ref.: #64954]

GC-content

64.2 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Acidiferrobacter sp. SPIII_3 PATRIC: 1281578.45
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acidiferrobacter sp. SPIII_3 SPIII_3 NCBI: GCA_003184265.1
[Ref.: #69480]	flagellated	no	94.225	no
[Ref.: #69480]	gram-positive	no	98.187	no
[Ref.: #69480]	anaerobic	no	94.951	no
[Ref.: #69480]	halophile	no	89.938	no
[Ref.: #69480]	spore-forming	no	93.167	no
[Ref.: #69480]	glucose-util	yes	59.857	no
[Ref.: #69480]	aerobic	no	85.256	no
[Ref.: #69480]	thermophile	no	87.895	yes
[Ref.: #69480]	motile	no	74.562	no
[Ref.: #69480]	glucose-ferment	no	84.996	no

Availability in culture collections External links

[Ref.: #64954]

Culture collection no.

DSM 27195

[Ref.: #111111]

SI-ID 403300

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Insights into the biology of acidophilic members of the Acidiferrobacteraceae family derived from comparative genomic analyses.	Issotta F, Moya-Beltran A, Mena C, Covarrubias PC, Thyssen C, Bellenberg S, Sand W, Quatrini R, Vera M	Res Microbiol	10.1016/j.resmic.2018.08.001	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#64954

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27195

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111111

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403300.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Acidiferrobacter sp. in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Acidiferrobacter sp. SPIII_3

Acidiferrobacter sp. SPIII_3 SPIII_3

Change proposal

Change proposal