Acidiferrobacter sp. (DSM 27195, SPIII/3)

Name: Acidiferrobacter sp. (DSM 27195, SPIII/3)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158294

Type strain

Strain Designation SPIII/3

Culture col. no. DSM 27195 SPIII/3

NCBI tax ID(s) 1872107

Special Collections DSMZ

History <- Ch. Thyssen, Univ. Duisburg-Essen, Germany; SPIII/3 <- W. Sand; {1995}

Links

SPIII/3 is a bacterium that was isolated from surface exposed pyrite vein.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 403300

DSM 27195

@ref 20215

Last LPSN update 2026-02-09 11:38:17

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Acidiferrobacterales

Family Acidiferrobacteraceae

Genus Acidiferrobacter

Full scientific name Acidiferrobacter Hallberg et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	95.833
125439	negative	94.1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
64954	LEPTOSPIRILLUM (HH) MEDIUM (DSMZ Medium 882)		Medium recipe at MediaDive	Name: LEPTOSPIRILLUM (HH) MEDIUM (DSMZ Medium 882) Composition: FeSO4 x 7 H2O 19.98 g/l CaCl2 x 2 H2O 0.146853 g/l (NH4)2SO4 0.131868 g/l MgCl2 x 6 H2O 0.0529471 g/l KH2PO4 0.0269731 g/l MnCl2 x 4 H2O 7.59241e-05 g/l ZnCl2 6.79321e-05 g/l CuCl2 x 2 H2O 6.69331e-05 g/l CoCl2 x 6 H2O 6.39361e-05 g/l H3BO3 3.0969e-05 g/l Na2MoO4 9.99001e-06 g/l H2SO4 Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
64954	positive	growth	28

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		94.4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Geologic

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
64954	surface exposed pyrite vein	Murcia, La Union	Spain	ESP	Europe

Taxonmaps

69479

Global distribution of 16S sequence KC128649 (>99% sequence identity) for Acidiferrobacter thiooxydans subclade from Microbeatlas

Aquatic Samples	377
Soil Samples	214
Animal Samples	36
Plant Samples	14
Total Samples	641

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM318426v1 assembly for Acidiferrobacter sp. SPIII_3	complete	GCA_003184265	1281578.45	2833647300	1281578	93.21

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
64954	Acidiferrobacter sp. SPIII_3 16S ribosomal RNA gene, partial sequence	KC128649	1457		1281578

GC content

@ref	GC-content (mol%)	Method
64954	64.2	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Acidiferrobacter sp. SPIII_3
NCBI: GCA_003184265

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	72.40	no
125439	gram_stain	BacteriaNetⓘ	negative	94.10	no
125439	motility	BacteriaNetⓘ	yes	70.90	no
125439	spore_formation	BacteriaNetⓘ	no	94.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Acidiferrobacter sp. SPIII_3 SPIII_3
NCBI: GCA_003184265.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.83	no
125438	anaerobic	anaerobicⓘ	no	74.85	no
125438	aerobic	aerobicⓘ	yes	52.30	no
125438	spore-forming	spore-formingⓘ	no	89.65	no
125438	thermophilic	thermophileⓘ	no	90.03	yes
125438	flagellated	motile2+ⓘ	no	61.28	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Insights into the biology of acidophilic members of the Acidiferrobacteraceae family derived from comparative genomic analyses.	Issotta F, Moya-Beltran A, Mena C, Covarrubias PC, Thyssen C, Bellenberg S, Sand W, Quatrini R, Vera M	Res Microbiol	10.1016/j.resmic.2018.08.001	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#64954	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27195
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Acidiferrobacter sp. (DSM 27195, SPIII/3)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003184265

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media