Name: Salirhabdus salicampi BH128
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158295

Type strain:

Species: Salirhabdus salicampi

Strain Designation: BH128

Culture col. no.: DSM 19924, KACC 18690, NBRC 111874

Strain history: <- C. J. Kim, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, South Korea <- J.-M. Lim; BH128

NCBI tax ID(s): 476102 (species)

SI-ID 406300

DSM 19924

Section

Salirhabdus salicampi BH128 is an aerobe, spore-forming, mesophilic bacterium that forms circular colonies and was isolated from saltern soil.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Salirhabdus*
	Species	**Salirhabdus salicampi**
	Full Scientific Name (LPSN)	Salirhabdus salicampi Lee and Whang 2017

Information on morphological and physiological properties Morphology

[Ref.: #65244]	Gram stain	positive

[Ref.: #65244]	Cell length	1.5-2.0 µm

[Ref.: #65244]	Cell width	0.3-0.4 µm

[Ref.: #65244]	Cell shape	rod-shaped

[Ref.: #65244]	Motility	yes

[Ref.: #65244]	Flagellum arrangement	peritrichous

[Ref.: #65244]	Colony color	cream
[Ref.: #65244]	Colony shape	circular
[Ref.: #65244]	Incubation period	3 days
[Ref.: #65244]	Cultivation medium used	marine agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64956]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #64956]

Culture medium growth

[Ref.: #64956]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64956]

Culture medium composition

expand / minimize

[Ref.: #65244]

Culture medium

Marine agar (MA)

[Ref.: #65244]

Culture medium growth

[Ref.: #65244]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #64956]	growth	30 °C
[Ref.: #65244]	growth	15-53 °C
[Ref.: #65244]	optimum	35 °C

[Ref.: #64956]	Temperature range	mesophilic
[Ref.: #65244]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65244]			optimum	7
[Ref.: #65244]			growth	5.5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65244]

Oxygen tolerance

aerobe

[Ref.: #65244]	Spore description	terminal position in swollensporangia
[Ref.: #65244]	Type of spore	spore
[Ref.: #65244]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65244]		NaCl		growth	0-16	%(w/v)
[Ref.: #65244]		NaCl		optimum	6	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65244]	adipate ChEBI	-	assimilation
[Ref.: #65244]	amygdalin ChEBI	-	assimilation
[Ref.: #65244]	amygdalin ChEBI	-	builds acid from
[Ref.: #65244]	arbutin ChEBI	-	assimilation
[Ref.: #65244]	arbutin ChEBI	-	builds acid from
[Ref.: #65244]	casein	-	hydrolysis
[Ref.: #65244]	cellobiose ChEBI	-	assimilation
[Ref.: #65244]	cellobiose ChEBI	-	builds acid from
[Ref.: #65244]	citrate ChEBI	-	assimilation
[Ref.: #65244]	D-arabinose ChEBI	-	assimilation
[Ref.: #65244]	D-arabinose ChEBI	-	builds acid from
[Ref.: #65244]	D-arabitol ChEBI	-	assimilation
[Ref.: #65244]	D-arabitol ChEBI	-	builds acid from
[Ref.: #65244]	D-fructose ChEBI	+	assimilation
[Ref.: #65244]	D-fructose ChEBI	+	builds acid from
[Ref.: #65244]	D-fucose ChEBI	-	assimilation
[Ref.: #65244]	D-fucose ChEBI	-	builds acid from
[Ref.: #65244]	D-galactose ChEBI	-	assimilation
[Ref.: #65244]	D-galactose ChEBI	-	builds acid from
[Ref.: #65244]	D-glucose ChEBI	+	assimilation
[Ref.: #65244]	D-glucose ChEBI	+	builds acid from
[Ref.: #65244]	D-lyxose ChEBI	-	assimilation
[Ref.: #65244]	D-lyxose ChEBI	-	builds acid from
[Ref.: #65244]	D-mannitol ChEBI	-	assimilation
[Ref.: #65244]	D-mannitol ChEBI	-	builds acid from
[Ref.: #65244]	D-mannose ChEBI	+	assimilation
[Ref.: #65244]	D-mannose ChEBI	+	builds acid from
[Ref.: #65244]	D-ribose ChEBI	-	assimilation
[Ref.: #65244]	D-ribose ChEBI	-	builds acid from
[Ref.: #65244]	D-sorbitol ChEBI	-	assimilation
[Ref.: #65244]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #65244]	D-tagatose ChEBI	-	assimilation
[Ref.: #65244]	D-tagatose ChEBI	-	builds acid from
[Ref.: #65244]	D-xylose ChEBI	-	assimilation
[Ref.: #65244]	D-xylose ChEBI	+	builds acid from
[Ref.: #65244]	decanoate ChEBI	-	assimilation
[Ref.: #65244]	dna ChEBI	-	hydrolysis
[Ref.: #65244]	erythritol ChEBI	-	assimilation
[Ref.: #65244]	erythritol ChEBI	-	builds acid from
[Ref.: #65244]	esculin ChEBI	-	hydrolysis
[Ref.: #65244]	esculin ferric citrate	-	assimilation
[Ref.: #65244]	esculin ferric citrate	-	builds acid from
[Ref.: #65244]	galactitol ChEBI	-	assimilation
[Ref.: #65244]	galactitol ChEBI	-	builds acid from
[Ref.: #65244]	gelatin ChEBI	-	hydrolysis
[Ref.: #65244]	gentiobiose ChEBI	-	assimilation
[Ref.: #65244]	gentiobiose ChEBI	-	builds acid from
[Ref.: #65244]	glucose ChEBI	-	fermentation
[Ref.: #65244]	glycerol ChEBI	-	assimilation
[Ref.: #65244]	glycerol ChEBI	-	builds acid from
[Ref.: #65244]	glycogen ChEBI	-	assimilation
[Ref.: #65244]	glycogen ChEBI	-	builds acid from
[Ref.: #65244]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #65244]	inulin ChEBI	-	assimilation
[Ref.: #65244]	inulin ChEBI	-	builds acid from
[Ref.: #65244]	L-arabinose ChEBI	-	assimilation
[Ref.: #65244]	L-arabinose ChEBI	-	builds acid from
[Ref.: #65244]	L-arabitol ChEBI	-	assimilation
[Ref.: #65244]	L-arabitol ChEBI	-	builds acid from
[Ref.: #65244]	L-fucose ChEBI	-	assimilation
[Ref.: #65244]	L-fucose ChEBI	-	builds acid from
[Ref.: #65244]	L-rhamnose ChEBI	-	assimilation
[Ref.: #65244]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #65244]	L-sorbose ChEBI	-	assimilation
[Ref.: #65244]	L-sorbose ChEBI	-	builds acid from
[Ref.: #65244]	L-tyrosine ChEBI	-	hydrolysis
[Ref.: #65244]	L-xylose ChEBI	-	assimilation
[Ref.: #65244]	L-xylose ChEBI	-	builds acid from
[Ref.: #65244]	lactose ChEBI	-	assimilation
[Ref.: #65244]	lactose ChEBI	-	builds acid from
[Ref.: #65244]	malate ChEBI	-	assimilation
[Ref.: #65244]	maltose ChEBI	-	assimilation
[Ref.: #65244]	maltose ChEBI	-	builds acid from
[Ref.: #65244]	melezitose ChEBI	-	assimilation
[Ref.: #65244]	melezitose ChEBI	-	builds acid from
[Ref.: #65244]	melibiose ChEBI	-	assimilation
[Ref.: #65244]	melibiose ChEBI	-	builds acid from
[Ref.: #65244]	methyl alpha-D-glucopyranoside ChEBI	-	assimilation
[Ref.: #65244]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #65244]	methyl alpha-D-mannoside ChEBI	-	assimilation
[Ref.: #65244]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #65244]	methyl beta-D-xylopyranoside ChEBI	-	assimilation
[Ref.: #65244]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #65244]	myo-inositol ChEBI	-	assimilation
[Ref.: #65244]	myo-inositol ChEBI	-	builds acid from
[Ref.: #65244]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #65244]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #65244]	nitrate ChEBI	-	reduction
[Ref.: #65244]	phenylacetate ChEBI	-	assimilation
[Ref.: #65244]	potassium 2-dehydro-D-gluconate	-	assimilation
[Ref.: #65244]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #65244]	potassium 5-dehydro-D-gluconate	-	assimilation
[Ref.: #65244]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #65244]	potassium gluconate ChEBI	-	assimilation
[Ref.: #65244]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #65244]	raffinose ChEBI	-	builds acid from
[Ref.: #65244]	raffinose ChEBI	+	assimilation
[Ref.: #65244]	ribitol ChEBI	-	assimilation
[Ref.: #65244]	ribitol ChEBI	-	builds acid from
[Ref.: #65244]	salicin ChEBI	-	assimilation
[Ref.: #65244]	salicin ChEBI	-	builds acid from
[Ref.: #65244]	starch ChEBI	-	builds acid from
[Ref.: #65244]	starch ChEBI	+	assimilation
[Ref.: #65244]	starch ChEBI	+	hydrolysis
[Ref.: #65244]	sucrose ChEBI	+	assimilation
[Ref.: #65244]	sucrose ChEBI	+	builds acid from
[Ref.: #65244]	trehalose ChEBI	-	assimilation
[Ref.: #65244]	trehalose ChEBI	-	builds acid from
[Ref.: #65244]	turanose ChEBI	-	assimilation
[Ref.: #65244]	turanose ChEBI	-	builds acid from
[Ref.: #65244]	tween 20 ChEBI	+	hydrolysis
[Ref.: #65244]	tween 40 ChEBI	+	hydrolysis
[Ref.: #65244]	tween 60 ChEBI	+	hydrolysis
[Ref.: #65244]	tween 80 ChEBI	-	hydrolysis
[Ref.: #65244]	urea ChEBI	-	hydrolysis
[Ref.: #65244]	xanthine ChEBI	-	hydrolysis
[Ref.: #65244]	xylitol ChEBI	-	assimilation
[Ref.: #65244]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #65244]	acetoin ChEBI	no
[Ref.: #65244]	hydrogen sulfide ChEBI	no
[Ref.: #65244]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #65244]		acetoin ChEBI	-
[Ref.: #65244]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #65244]	acid phosphatase	+	3.1.3.2
[Ref.: #65244]	alkaline phosphatase	-	3.1.3.1
[Ref.: #65244]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65244]	alpha-fucosidase	+	3.2.1.51
[Ref.: #65244]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65244]	alpha-glucosidase	-	3.2.1.20
[Ref.: #65244]	alpha-mannosidase	+	3.2.1.24
[Ref.: #65244]	beta-galactosidase	+	3.2.1.23
[Ref.: #65244]	beta-glucosidase	+	3.2.1.21
[Ref.: #65244]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65244]	catalase	+	1.11.1.6
[Ref.: #65244]	cystine arylamidase	-	3.4.11.3
[Ref.: #65244]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65244]	esterase (C 4)	-
[Ref.: #65244]	esterase Lipase (C 8)	+
[Ref.: #65244]	leucine arylamidase	-	3.4.11.1
[Ref.: #65244]	lipase (C 14)	-
[Ref.: #65244]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65244]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65244]	trypsin	-	3.4.21.4
[Ref.: #65244]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65244]

Fatty acid	Percentage
C15:0 anteiso	33.1
C15:0 iso	17.3
C17:0 iso	14.8
C17:0 anteiso	11.1
C16:0 iso	6.7
C14:0 iso	5.4
C15:1ω7c alcohol	3.7
C16:0	2
C17:1 iso ω10c	1.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64956]	Sample type/isolated from	saltern soil
[Ref.: #64956]	Geographic location (country and/or sea, region)	Bigeum Island (34° 45' 42.76'' N 125° 58' 48.97'' E)
[Ref.: #64956]	Country	Republic of Korea
[Ref.: #64956]	Country ISO 3 Code	KOR
[Ref.: #64956]	Continent	Asia
[Ref.: #64956]	Geographic location	34.7619°/125.9800°

[Ref.: #65244]	Sample type/isolated from	soil sample
[Ref.: #65244]	Geographic location (country and/or sea, region)	saltern soil located at Bigeum Island
[Ref.: #65244]	Country	Republic of Korea
[Ref.: #65244]	Country ISO 3 Code	KOR
[Ref.: #65244]	Continent	Asia
[Ref.: #65244]	Geographic location	35.7618°/125.9800°
[Ref.: #65244]	Enrichment culture	marine agar
[Ref.: #65244]	Enrichment culture composition	complemented with 6 % (w/v) NaCl anda final concentration of 7.95 % (w/v) NaCl
[Ref.: #65244]	Enrichment culture duration	7 days
[Ref.: #65244]	Enrichment culture temperature	28 ̊C
[Ref.: #65244]	Isolation/enrichment procedure	diluting a soil sample in sterile 8 % (w/v) NaCl solution and plating on marine agar (MA) medium (Difco) with the addition of 6 % (w/v) NaCl [final concentration, 7.95 % (w/v) NaCl], followed by aerobic incubation at 28°C for 7 days. The pH of the medium was adjusted to pH 7.0 with 1 M NaOH. The strain was subsequently purified three times by plating on MA with the addition of 6 % (w/v) NaCl at 28°C for 7 days and maintained on the same medium.
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU191907 (>99% sequence identity) for Salirhabdus salicampi subclade from Microbeatlas

Aquatic Samples
Soil Samples	3
Animal Samples
Plant Samples	1
Total Samples	4

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #64956]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64956]	Salirhabdus salicampi strain BH128 16S ribosomal RNA gene, partial sequence	EU191907	1441	ENA	476102 tax ID

[Ref.: #64956]

GC-content

36.5 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #64956]

Culture collection no.

DSM 19924, KACC 18690, NBRC 111874

[Ref.: #111112]

SI-ID 406300

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salirhabdus salicampi sp. nov., a halotolerant bacterium isolated from a saltern.	Lee JC, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.002334	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#64956

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19924

#65244

Jae-Chan Lee, Kyung-Sook Whang: Salirhabdus salicampi sp. nov., a halotolerant bacterium isolated from a saltern. IJSEM 67: 4578 - 4583 2017 ( DOI 10.1099/ijsem.0.002334 , PubMed 28945542 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#111112

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406300.1 )

* These data were automatically processed and therefore are not curated

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