Name: Neisseria dumasiana 93087
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158278

Type strain:

Species: Neisseria dumasiana

Strain Designation: 93087

Culture col. no.: DSM 104677, LMG 30012

Strain history: <- W. Wolfgang, Wadsworth Center, NYS Dept. of Health, Albany, USA; 93087

NCBI tax ID(s): 1931275 (species)

SI-ID 403323

DSM 104677

Section

Neisseria dumasiana 93087 is a facultative anaerobe, mesophilic, Gram-negative human pathogen that forms circular colonies and was isolated from human sputum of a 79-year-old female.

coccus-shaped
colony-forming
Gram-negative
facultative anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Neisseriales*
	Family	*Neisseriaceae*
	Genus	*Neisseria*
	Species	**Neisseria dumasiana**
	Full Scientific Name (LPSN)	Neisseria dumasiana Wroblewski et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #65274]	Gram stain	negative

[Ref.: #65274]	Cell length	0.8 µm

[Ref.: #65274]	Cell shape	coccus-shaped

[Ref.: #65274]	Motility	no

[Ref.: #65274]	Type of hemolysis	gamma
[Ref.: #65274]	Colony size	1.9-2.8 mm
[Ref.: #65274]	Colony color	grey
[Ref.: #65274]	Colony shape	circular
[Ref.: #65274]	Incubation period	2 days
[Ref.: #65274]	Cultivation medium used	chocolate agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

BHI MEDIUM (DSMZ Medium 215)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

chocolate agar

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

Brain Heart infusion broth

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Culture medium growth

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Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

MacConkey agar

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Culture medium growth

	Kind of temperature		Temperature
[Ref.: #64938]		growth	37 °C
[Ref.: #65274]		growth	22-42 °C
[Ref.: #65274]		optimum	37 °C
[Ref.: #65274]	no	growth	4 °C

[Ref.: #64938]	Temperature range	mesophilic
[Ref.: #65274]	Temperature range	mesophilic
[Ref.: #65274]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #65274]			optimum	7.2
[Ref.: #65274]			growth	6-9.5

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

facultative anaerobe

	Salt	Tested relation		Salt conc.
[Ref.: #65274]	NaCl		growth	2	%
[Ref.: #65274]	NaCl	no	growth	5	%
[Ref.: #65274]	NaCl	no	growth	>5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65274]	D-fructose ChEBI	-	builds acid from
[Ref.: #65274]	D-glucose ChEBI	-	builds acid from
[Ref.: #68377]	D-glucose ChEBI	+	builds acid from	* from API NH
[Ref.: #65274]	D-mannitol ChEBI	-	builds acid from
[Ref.: #65274]	D-xylose ChEBI	-	builds acid from
[Ref.: #65274]	esculin ChEBI	-	hydrolysis
[Ref.: #65274]	gelatin ChEBI	-	hydrolysis
[Ref.: #65274]	maltose ChEBI	-	builds acid from
[Ref.: #68377]	maltose ChEBI	-	builds acid from	* from API NH
[Ref.: #65274]	nitrate ChEBI	+	reduction
[Ref.: #68377]	ornithine ChEBI	-	degradation	* from API NH
[Ref.: #65274]	sucrose ChEBI	-	builds acid from
[Ref.: #65274]	sucrose ChEBI	+	builds acid from
[Ref.: #68377]	sucrose ChEBI	-	builds acid from	* from API NH
[Ref.: #68377]	tryptophan ChEBI	-	energy source	* from API NH
[Ref.: #65274]	urea ChEBI	-	hydrolysis
[Ref.: #68377]	urea ChEBI	-	hydrolysis	* from API NH
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65274]		indole ChEBI	no
[Ref.: #68377]		indole ChEBI	no	* from API NH

	Physiological tests	Metabolite	Indole test
[Ref.: #68377]		indole ChEBI	-	* from API NH

	Enzyme	Enzyme activity	EC number
[Ref.: #65274]	alkaline phosphatase	-	3.1.3.1
[Ref.: #68377]	alkaline phosphatase	-	3.1.3.1	* from API NH
[Ref.: #65274]	beta-galactosidase	-	3.2.1.23
[Ref.: #68377]	beta-galactosidase	-	3.2.1.23	* from API NH
[Ref.: #68377]	beta-lactamase	-	3.5.2.6	* from API NH
[Ref.: #65274]	catalase	+	1.11.1.6
[Ref.: #65274]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65274]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #65274]	lipase	-
[Ref.: #68377]	lipase	-		* from API NH
[Ref.: #65274]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #68377]	ornithine decarboxylase	-	4.1.1.17	* from API NH
[Ref.: #65274]	proline-arylamidase	+	3.4.11.5
[Ref.: #68377]	proline-arylamidase	+	3.4.11.5	* from API NH
[Ref.: #68377]	tryptophan deaminase	-	4.1.99.1	* from API NH
[Ref.: #65274]	urease	-	3.5.1.5
[Ref.: #68377]	urease	-	3.5.1.5	* from API NH
	Only first 10 entries are displayed. Click here to see all.

API® NH:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Penicillinase productionPEN	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from maltoseMAL	Acid from sucroseSAC	Ornithine decarboxylaseODC	Urease/urea hydrolysisURE	LipaseLIP	Alkaline phosphatasePAL	beta-Galactosidasebeta GAL	Proline arylamidaseProA	gamma-Glutamyl transferaseGGT	Indole productionIND
[Ref.: #64938]	5968	-	+	+/-	-	-	-	-	-	-	-	+	+	-
[Ref.: #64938]	5911	-	+	-	-	-	-	-	-	-	-	+	+/-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64938]	Sample type/isolated from	human sputum of a 79-year-old female
[Ref.: #64938]	Geographic location (country and/or sea, region)	New York State, Saratoga County
[Ref.: #64938]	Country	USA
[Ref.: #64938]	Country ISO 3 Code	USA
[Ref.: #64938]	Continent	North America
[Ref.: #64938]	Geographic location	43.1100°/-73.8700°

[Ref.: #65274]	Sample type/isolated from	sputum of a 79-year old female and from a dog´s mouth
[Ref.: #65274]	Geographic location (country and/or sea, region)	New York State
[Ref.: #65274]	Country	USA
[Ref.: #65274]	Country ISO 3 Code	USA
[Ref.: #65274]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Canidae (Dog)
#Host Body Product	#Fluids	#Sputum

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KY417828 (>99% sequence identity) for Neisseria dumasiana subclade from Microbeatlas

Aquatic Samples	153
Soil Samples	48
Animal Samples	2784
Plant Samples	1
Total Samples	2986

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #64938]	Pathogenicity (human)	yes, in single cases
[Ref.: #64938]	Pathogenicity (animal)	yes, in single cases
[Ref.: #64938]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64938]	Neisseria dumasiana strain 93087 16S ribosomal RNA gene, partial sequence	KY417828	1463	ENA	1931275 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Neisseria dumasiana 93087	GCA_002108505	contig	GenBank	1931275 tax ID	*
[Ref.: #66792]	Neisseria dumasiana LMG 30012	GCA_022870885	complete	GenBank	1931275 tax ID	*

[Ref.: #64938]	GC-content	50.5 mol%
[Ref.: #65274]	GC-content	50.5 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Neisseria dumasiana LMG 30012 NCBI: GCA_022870885.1
[Ref.: #69480]	flagellated	no	93.568	no
[Ref.: #69480]	gram-positive	no	98.7	yes
[Ref.: #69480]	anaerobic	no	97.133	yes
[Ref.: #69480]	aerobic	no	89.753	no
[Ref.: #69480]	halophile	no	76.604	no
[Ref.: #69480]	spore-forming	no	96.743	no
[Ref.: #69480]	motile	no	87.765	no
[Ref.: #69480]	glucose-ferment	no	87.616	no
[Ref.: #69480]	thermophile	no	99.321	yes
[Ref.: #69480]	glucose-util	yes	77.506	no

Availability in culture collections External links

[Ref.: #64938]

Culture collection no.

DSM 104677, LMG 30012

[Ref.: #111096]

SI-ID 403323

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Neisseria dumasiana sp. nov. from human sputum and a dog's mouth.	Wroblewski D, Cole J, McGinnis J, Perez M, Wilson H, Mingle LA, Musser KA, Wolfgang WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002148	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#64938

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104677

#65274

Danielle Wroblewski, Jocelyn Cole, Jana McGinnis, Maria Perez, Harriet Wilson, Lisa A. Mingle, Kimberlee A. Musser, William J. Wolfgang: Neisseria dumasiana sp. nov. from human sputum and a dog's mouth. IJSEM 67: 4304 - 4310 2017 ( DOI 10.1099/ijsem.0.002148 , PubMed 28933320 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68377

Automatically annotated from API NH .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#111096

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403323.1 )

* These data were automatically processed and therefore are not curated

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Neisseria dumasiana LMG 30012

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