Name: Neisseria dumasiana 93087
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158278

Type strain:

Species: Neisseria dumasiana

Strain Designation: 93087

Culture col. no.: DSM 104677, LMG 30012

Strain history: <- W. Wolfgang, Wadsworth Center, NYS Dept. of Health, Albany, USA; 93087

NCBI tax ID(s): 1931275 (species)

SI-ID 403323

DSM 104677

Special Collections

Section

Neisseria dumasiana 93087 is a facultative anaerobe, Gram-negative, coccus-shaped human pathogen that forms circular colonies and was isolated from human sputum of a 79-year-old female.

coccus-shaped
colony-forming
Gram-negative
facultative anaerobe
human pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Neisseriales*
	Family	*Neisseriaceae*
	Genus	*Neisseria*
	Species	**Neisseria dumasiana**
	Full Scientific Name (LPSN)	Neisseria dumasiana Wroblewski et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #65274]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.354

[Ref.: #65274]	Cell length	0.8 µm

[Ref.: #65274]	Cell shape	coccus-shaped

[Ref.: #65274]	Motility	no

[Ref.: #65274]	Type of hemolysis	gamma
[Ref.: #65274]	Colony size	1.9-2.8 mm
[Ref.: #65274]	Colony color	grey
[Ref.: #65274]	Colony shape	circular
[Ref.: #65274]	Incubation period	2 days
[Ref.: #65274]	Cultivation medium used	chocolate agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64938]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #64938]

Culture medium growth

[Ref.: #64938]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64938]

Culture medium composition

expand / minimize

[Ref.: #64938]

Culture medium

BHI MEDIUM (DSMZ Medium 215)

[Ref.: #64938]

Culture medium growth

[Ref.: #64938]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64938]

Culture medium composition

expand / minimize

[Ref.: #65274]

Culture medium

chocolate agar

[Ref.: #65274]

Culture medium growth

[Ref.: #65274]

Culture medium composition

expand / minimize

[Ref.: #65274]

Culture medium

Brain Heart infusion broth

[Ref.: #65274]

Culture medium growth

[Ref.: #64938]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #64938]

Culture medium growth

[Ref.: #64938]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64938]

Culture medium composition

expand / minimize

[Ref.: #65274]

Culture medium

MacConkey agar

[Ref.: #65274]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #64938]		growth	37 °C
[Ref.: #65274]		growth	22-42 °C
[Ref.: #65274]		optimum	37 °C
[Ref.: #65274]	no	growth	4 °C

	pH	Kind of pH		pH
[Ref.: #65274]			optimum	7.2
[Ref.: #65274]			growth	6-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65274]

Oxygen tolerance

facultative anaerobe

	Salt	Tested relation		Salt conc.
[Ref.: #65274]	NaCl		growth	2	%
[Ref.: #65274]	NaCl	no	growth	5	%
[Ref.: #65274]	NaCl	no	growth	>5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65274]	D-fructose ChEBI	-	builds acid from
[Ref.: #65274]	D-glucose ChEBI	-	builds acid from
[Ref.: #68377]	D-glucose ChEBI	+	builds acid from	* from API NH
[Ref.: #65274]	D-mannitol ChEBI	-	builds acid from
[Ref.: #65274]	D-xylose ChEBI	-	builds acid from
[Ref.: #65274]	esculin ChEBI	-	hydrolysis
[Ref.: #65274]	gelatin ChEBI	-	hydrolysis
[Ref.: #65274]	maltose ChEBI	-	builds acid from
[Ref.: #68377]	maltose ChEBI	-	builds acid from	* from API NH
[Ref.: #65274]	nitrate ChEBI	+	reduction
[Ref.: #68377]	ornithine ChEBI	-	degradation	* from API NH
[Ref.: #65274]	sucrose ChEBI	-	builds acid from
[Ref.: #65274]	sucrose ChEBI	+	builds acid from
[Ref.: #68377]	sucrose ChEBI	-	builds acid from	* from API NH
[Ref.: #68377]	tryptophan ChEBI	-	energy source	* from API NH
[Ref.: #65274]	urea ChEBI	-	hydrolysis
[Ref.: #68377]	urea ChEBI	-	hydrolysis	* from API NH
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65274]		indole ChEBI	no
[Ref.: #68377]		indole ChEBI	no	* from API NH

	Physiological tests	Metabolite	Indole test
[Ref.: #68377]		indole ChEBI	-	* from API NH

	Enzyme	Enzyme activity	EC number
[Ref.: #65274]	alkaline phosphatase	-	3.1.3.1
[Ref.: #68377]	alkaline phosphatase	-	3.1.3.1	* from API NH
[Ref.: #65274]	beta-galactosidase	-	3.2.1.23
[Ref.: #68377]	beta-galactosidase	-	3.2.1.23	* from API NH
[Ref.: #68377]	beta-lactamase	-	3.5.2.6	* from API NH
[Ref.: #65274]	catalase	+	1.11.1.6
[Ref.: #65274]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65274]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #65274]	lipase	-
[Ref.: #68377]	lipase	-		* from API NH
[Ref.: #65274]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #68377]	ornithine decarboxylase	-	4.1.1.17	* from API NH
[Ref.: #65274]	proline-arylamidase	+	3.4.11.5
[Ref.: #68377]	proline-arylamidase	+	3.4.11.5	* from API NH
[Ref.: #68377]	tryptophan deaminase	-	4.1.99.1	* from API NH
[Ref.: #65274]	urease	-	3.5.1.5
[Ref.: #68377]	urease	-	3.5.1.5	* from API NH
	Only first 10 entries are displayed. Click here to see all.

API® NH:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Penicillinase productionPEN	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from maltoseMAL	Acid from sucroseSAC	Ornithine decarboxylaseODC	Urease/urea hydrolysisURE	LipaseLIP	Alkaline phosphatasePAL	beta-Galactosidasebeta GAL	Proline arylamidaseProA	gamma-Glutamyl transferaseGGT	Indole productionIND
[Ref.: #64938]	5968	-	+	+/-	-	-	-	-	-	-	-	+	+	-
[Ref.: #64938]	5911	-	+	-	-	-	-	-	-	-	-	+	+/-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64938]	Sample type/isolated from	human sputum of a 79-year-old female
[Ref.: #64938]	Geographic location (country and/or sea, region)	New York State, Saratoga County
[Ref.: #64938]	Country	USA
[Ref.: #64938]	Country ISO 3 Code	USA
[Ref.: #64938]	Continent	North America
[Ref.: #64938]	Geographic location	43.1100°/-73.8700°

[Ref.: #65274]	Sample type/isolated from	sputum of a 79-year old female and from a dog´s mouth
[Ref.: #65274]	Geographic location (country and/or sea, region)	New York State
[Ref.: #65274]	Country	USA
[Ref.: #65274]	Country ISO 3 Code	USA
[Ref.: #65274]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Canidae (Dog)
#Host Body Product	#Fluids	#Sputum

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KY417828 (>99% sequence identity) for Neisseria dumasiana subclade from Microbeatlas

Aquatic Samples	153
Soil Samples	48
Animal Samples	2784
Plant Samples	1
Total Samples	2986

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #64938]	Pathogenicity (human)	yes, in single cases
[Ref.: #64938]	Pathogenicity (animal)	yes, in single cases
[Ref.: #64938]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64938]	Neisseria dumasiana strain 93087 16S ribosomal RNA gene, partial sequence	KY417828	1463	GenBank ENA	1931275 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Neisseria dumasiana 93087	GCA_002108505	contig	GenBank ENA	1931275 tax ID	*
[Ref.: #66792]	Neisseria dumasiana LMG 30012	GCA_022870885	complete	GenBank ENA	1931275 tax ID	*

[Ref.: #64938]	GC-content	50.5 mol%
[Ref.: #65274]	GC-content	50.5 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Neisseria dumasiana LMG 30012 NCBI: GCA_022870885.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.354	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	92.214	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	51.522	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.93	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.969	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	85.373	yes

Availability in culture collections External links

[Ref.: #64938]

Culture collection no.

DSM 104677, LMG 30012

[Ref.: #111096]

SI-ID 403323

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Neisseria dumasiana sp. nov. from human sputum and a dog's mouth.	Wroblewski D, Cole J, McGinnis J, Perez M, Wilson H, Mingle LA, Musser KA, Wolfgang WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002148	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#64938

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104677

#65274

Danielle Wroblewski, Jocelyn Cole, Jana McGinnis, Maria Perez, Harriet Wilson, Lisa A. Mingle, Kimberlee A. Musser, William J. Wolfgang: Neisseria dumasiana sp. nov. from human sputum and a dog's mouth. IJSEM 67: 4304 - 4310 2017 ( DOI 10.1099/ijsem.0.002148 , PubMed 28933320 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68377

Automatically annotated from API NH .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#111096

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403323.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Neisseria dumasiana in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Neisseria dumasiana LMG 30012

Change proposal

Change proposal