Name: Labilibaculum filiforme 59.16B
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158272

Type strain:

Species: Labilibaculum filiforme

Strain Designation: 59.16B

Culture col. no.: DSM 101180, JCM 31101

Strain history: V. Vandieken; Univ. of Oldenburg, Germany; 59.16B.

NCBI tax ID(s): 1940526 (species)

SI-ID 402032

DSM 101180

Other strains from Labilibaculum filiforme

L. filiforme JCM 31099, DSM 101179
L. filiforme JCM 31102, DSM 101181

Section

Labilibaculum filiforme 59.16B is a mesophilic, Gram-negative bacterium that was isolated from marine subsurface sediment.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Marinifilaceae*
	Genus	*Labilibaculum*
	Species	**Labilibaculum filiforme**
	Full Scientific Name (LPSN)	Labilibaculum filiforme Vandieken et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.999

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64931]

Culture medium

ORENIA SALINARIA MEDIUM (DSMZ Medium 1534)

[Ref.: #64931]

Culture medium growth

[Ref.: #64931]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64931]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #64931]			growth	25 °C
[Ref.: #67770]			growth	25 °C

[Ref.: #64931]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.986
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64931]	Sample type/isolated from	marine subsurface sediment
[Ref.: #64931]	Geographic location (country and/or sea, region)	Baltic Sea (Little Belt, 55° 0.29' N, 10° 6.49' E) 32 mbsf, IODP Expedition 347, Research vessel "Greatship Manisha"
[Ref.: #64931]	Country	Denmark
[Ref.: #64931]	Country ISO 3 Code	DNK
[Ref.: #64931]	Continent	Europe
[Ref.: #64931]	Geographic location	55.0048°/10.1082°

[Ref.: #67770]	Sample type/isolated from	Subsurface of marine sediment from Little Belt (Baltic Sea)
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KY509308 (>99% sequence identity) for Labilibaculum from Microbeatlas

Aquatic Samples	1172
Soil Samples	41
Animal Samples	36
Plant Samples	1
Total Samples	1250

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bacteroidetes bacterium strain 59.16B 16S ribosomal RNA gene, partial sequence	KY509308	1380	ENA	1898104 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Labilibaculum filiforme 59.16B	GCA_002843315	scaffold	GenBank	1940526 tax ID
[Ref.: #66792]	Labilibaculum filiforme 59.16B	2648501602	draft	JGI IMG/M	1940526 tax ID	*

[Ref.: #64931]	GC-content	35.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #64931]	GC-content	35.4 mol%	sequence analysis
[Ref.: #67770]	GC-content	35.4 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Labilibaculum filiforme 59.16B NCBI: GCA_002843315.1
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #64931]

Culture collection no.

DSM 101180, JCM 31101

[Ref.: #111090]

SI-ID 402032

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Labilibaculum manganireducens gen. nov., sp. nov. and Labilibaculum filiforme sp. nov., Novel Bacteroidetes Isolated from Subsurface Sediments of the Baltic Sea.	Vandieken V, Marshall IPG, Niemann H, Engelen B, Cypionka H	Front Microbiol	10.3389/fmicb.2017.02614	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#64931

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101180

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111090

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402032.1 )

* These data were automatically processed and therefore are not curated

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