Labilibaculum filiforme (DSM 101180, JCM 31101, 59.16B)

Name: Labilibaculum filiforme (DSM 101180, JCM 31101, 59.16B)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158272

Type strain

Strain Designation 59.16B

Culture col. no. DSM 101180 JCM 31101 59.16B

NCBI tax ID(s) 1940526

Special Collections DSMZ JCM

History <- V. Vandieken, ICMB, Univ. Oldenburg, Germany; 59.16B V. Vandieken; Univ. of Oldenburg, Germany; 59.16B.

Links

Labilibaculum filiforme 59.16B is a mesophilic prokaryote that was isolated from marine subsurface sediment.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 402032

JCM 31101,DSM 101180

@ref 20215

Last LPSN update 2026-02-09 11:38:16

Domain Bacteria

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Marinifilaceae

Genus Labilibaculum

Species Labilibaculum filiforme

Full scientific name Labilibaculum filiforme Vandieken et al. 2019

Synonyms (1)

"Marinifilum filiforme"

BacDive ID	Other strains from **Labilibaculum filiforme** (2)	Type strain
163948	L. filiforme JCM 31099, DSM 101179
163949	L. filiforme JCM 31102, DSM 101181

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.3

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
64931	ORENIA SALINARIA MEDIUM (DSMZ Medium 1534)		Medium recipe at MediaDive	Name: MARINIFILUM MEDIUM (DSMZ Medium 1534) Composition: NaCl 13.0 g/l MgCl2 x 6 H2O 2.8 g/l NaHCO3 2.52 g/l Glucose 2.0 g/l Na2SO4 1.42 g/l CaCl2 x 2 H2O 0.7 g/l Na2S x 9 H2O 0.5 g/l KCl 0.36 g/l NH4Cl 0.25 g/l KH2PO4 0.2 g/l HCl 0.0025 g/l FeCl2 x 4 H2O 0.0015 g/l Resazurin 0.001 g/l NaOH 0.0005 g/l Pyridoxamine Dihydrochloride 0.00025 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l Nicotinic acid 0.0001 g/l ZnCl2 7e-05 g/l Thiamine HCl 5e-05 g/l Vitamin B12 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l Calcium D-(+)-pantothenate 2.5e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Biotin 2e-05 g/l H3BO3 6e-06 g/l Na2WO4 x 2 H2O 4e-06 g/l Na2SeO3 x 5 H2O 3e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
64931	positive	growth	25	mesophilic
67770	positive	growth	25	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96.3

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
64931	marine subsurface sediment	Baltic Sea (Little Belt, 55° 0.29' N, 10° 6.49' E) 32 mbsf, IODP Expedition 347, Research vessel "Greatship Manisha"	Denmark	DNK	Europe	55.0048	10.1082 55.0048/10.1082
67770	Subsurface of marine sediment from Little Belt (Baltic Sea)

Taxonmaps

69479

Global distribution of 16S sequence KY509308 (>99% sequence identity) for Labilibaculum from Microbeatlas

Aquatic Samples	1172
Soil Samples	41
Animal Samples	36
Plant Samples	1
Total Samples	1250

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM284331v1 assembly for Labilibaculum filiforme 59.16B	scaffold	GCA_002843315	1940526.3	2648501602	1940526	64.8

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Bacteroidota bacterium strain 59.16B 16S ribosomal RNA gene, partial sequence	KY509308	1380		1898104

GC content

@ref	GC-content (mol%)	Method
64931	35.8	high performance liquid chromatography (HPLC)
64931	35.4	sequence analysis
67770	35.4	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Labilibaculum filiforme 59.16B
NCBI: GCA_002843315

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	75.80	no
125439	motility	BacteriaNetⓘ	yes	53.80	no
125439	gram_stain	BacteriaNetⓘ	negative	99.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.30	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Labilibaculum manganireducens gen. nov., sp. nov. and Labilibaculum filiforme sp. nov., Novel Bacteroidetes Isolated from Subsurface Sediments of the Baltic Sea.	Vandieken V, Marshall IPG, Niemann H, Engelen B, Cypionka H	Front Microbiol	10.3389/fmicb.2017.02614	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#64931	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101180
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Labilibaculum filiforme (DSM 101180, JCM 31101, 59.16B)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002843315

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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