Name: Frateuria defendens DLB
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158273

Type strain:

Species: Frateuria defendens

Strain Designation: DLB, Dho

Culture col. no.: DSM 106169, NCCB 100648

Strain history: <- O. Lidor, ARO - Agricultural Research Organisation, Ramat Yishai, Israel; DLB <- L. Iasur-Kruh

NCBI tax ID(s): 2219559 (species)

SI-ID 403710

DSM 106169

Section

Frateuria defendens DLB is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from planthopper Hyalesthes obsoletus .

colony-forming
Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Rhodanobacteraceae*
	Genus	*Frateuria*
	Species	**Frateuria defendens**
	Full Scientific Name (LPSN)	Frateuria defendens Lidor et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #67860]	Gram stain	negative

[Ref.: #67860]	Cell length	1-1.3 µm

[Ref.: #67860]	Cell width	0.2-0.3 µm

[Ref.: #67860]	Cell shape	rod-shaped

[Ref.: #67860]	Motility	yes

[Ref.: #67860]	Colony size	1-1.5 mm
[Ref.: #67860]	Colony color	yellow
[Ref.: #67860]	Colony shape	circular
[Ref.: #67860]	Incubation period	3 days
[Ref.: #67860]	Cultivation medium used	Reasoner's 2A agar (R2A)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64932]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #64932]

Culture medium growth

[Ref.: #64932]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64932]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #64932]	growth	28 °C
[Ref.: #67860]	growth	15-42 °C
[Ref.: #67860]	optimum	28 °C

[Ref.: #64932]	Temperature range	mesophilic
[Ref.: #67860]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #67860]			optimum	7
[Ref.: #67860]			growth	4-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67860]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #67860]		NaCl		maximum	2	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #67860]	adipate ChEBI	-	assimilation
[Ref.: #67860]	amygdalin ChEBI	+	builds acid from
[Ref.: #67860]	arbutin ChEBI	+	builds acid from
[Ref.: #67860]	cellobiose ChEBI	-	builds acid from
[Ref.: #67860]	cellulose ChEBI	+	hydrolysis
[Ref.: #67860]	D-arabinose ChEBI	-	builds acid from
[Ref.: #67860]	D-arabitol ChEBI	-	builds acid from
[Ref.: #67860]	D-fructose ChEBI	+	builds acid from
[Ref.: #67860]	D-fucose ChEBI	+	builds acid from
[Ref.: #67860]	D-galactose ChEBI	+	builds acid from
[Ref.: #67860]	D-glucose ChEBI	+	builds acid from
[Ref.: #67860]	D-lyxose ChEBI	-	builds acid from
[Ref.: #67860]	D-mannitol ChEBI	-	builds acid from
[Ref.: #67860]	D-mannose ChEBI	+	builds acid from
[Ref.: #67860]	D-ribose ChEBI	+	builds acid from
[Ref.: #67860]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #67860]	D-tagatose ChEBI	-	builds acid from
[Ref.: #67860]	D-xylose ChEBI	+	builds acid from
[Ref.: #67860]	decanoate ChEBI	-	assimilation
[Ref.: #67860]	dna ChEBI	-	hydrolysis
[Ref.: #67860]	erythritol ChEBI	-	builds acid from
[Ref.: #67860]	esculin ChEBI	+	hydrolysis
[Ref.: #67860]	esculin ferric citrate	-	builds acid from
[Ref.: #67860]	galactitol ChEBI	-	builds acid from
[Ref.: #67860]	gelatin ChEBI	-	hydrolysis
[Ref.: #67860]	gentiobiose ChEBI	-	builds acid from
[Ref.: #67860]	glycerol ChEBI	-	builds acid from
[Ref.: #67860]	glycogen ChEBI	-	builds acid from
[Ref.: #67860]	inulin ChEBI	-	builds acid from
[Ref.: #67860]	L-arabinose ChEBI	+	builds acid from
[Ref.: #67860]	L-arabitol ChEBI	-	builds acid from
[Ref.: #67860]	L-fucose ChEBI	-	builds acid from
[Ref.: #67860]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #67860]	L-sorbose ChEBI	-	builds acid from
[Ref.: #67860]	L-xylose ChEBI	-	builds acid from
[Ref.: #67860]	lactose ChEBI	-	builds acid from
[Ref.: #67860]	malate ChEBI	-	assimilation
[Ref.: #67860]	maltose ChEBI	+	builds acid from
[Ref.: #67860]	melezitose ChEBI	-	builds acid from
[Ref.: #67860]	melibiose ChEBI	+	builds acid from
[Ref.: #67860]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #67860]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #67860]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #67860]	myo-inositol ChEBI	-	builds acid from
[Ref.: #67860]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #67860]	nitrate ChEBI	+	reduction
[Ref.: #67860]	phenylacetate ChEBI	-	assimilation
[Ref.: #67860]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #67860]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #67860]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #67860]	raffinose ChEBI	+	builds acid from
[Ref.: #67860]	ribitol ChEBI	-	builds acid from
[Ref.: #67860]	salicin ChEBI	+	builds acid from
[Ref.: #67860]	sodium citrate ChEBI	-	assimilation
[Ref.: #67860]	starch ChEBI	-	builds acid from
[Ref.: #67860]	starch ChEBI	+	hydrolysis
[Ref.: #67860]	sucrose ChEBI	+	builds acid from
[Ref.: #67860]	trehalose ChEBI	-	builds acid from
[Ref.: #67860]	turanose ChEBI	-	builds acid from
[Ref.: #67860]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #67860]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #67860]	acid phosphatase	+	3.1.3.2
[Ref.: #67860]	alkaline phosphatase	+	3.1.3.1
[Ref.: #67860]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #67860]	alpha-fucosidase	-	3.2.1.51
[Ref.: #67860]	alpha-galactosidase	-	3.2.1.22
[Ref.: #67860]	alpha-glucosidase	-	3.2.1.20
[Ref.: #67860]	alpha-mannosidase	-	3.2.1.24
[Ref.: #67860]	beta-galactosidase	-	3.2.1.23
[Ref.: #67860]	beta-glucosidase	+	3.2.1.21
[Ref.: #67860]	beta-glucuronidase	-	3.2.1.31
[Ref.: #67860]	catalase	+	1.11.1.6
[Ref.: #67860]	cystine arylamidase	+	3.4.11.3
[Ref.: #67860]	cytochrome oxidase	+	1.9.3.1
[Ref.: #67860]	esterase (C 4)	+
[Ref.: #67860]	lipase (C 14)	-
[Ref.: #67860]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #67860]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #67860]	trypsin	-	3.4.21.4
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64932]	Sample type/isolated from	planthopper Hyalesthes obsoletus (Hemiptera: Cixiidae)
[Ref.: #64932]	Geographic location (country and/or sea, region)	Northern Israel near city of Katzrin
[Ref.: #64932]	Country	Israel
[Ref.: #64932]	Country ISO 3 Code	ISR
[Ref.: #64932]	Continent	Asia

[Ref.: #67860]	Sample type/isolated from	planthopper Hyalesthes obsoletus feeding on a Vitex agnuscastus (Abraham's balm) bush
[Ref.: #67860]	Sampling date	2011
[Ref.: #67860]	Country	Israel
[Ref.: #67860]	Country ISO 3 Code	ISR
[Ref.: #67860]	Continent	Asia
[Ref.: #67860]	Geographic location	32.9880°/35.7070°
[Ref.: #67860]	Enrichment culture	CCT agar
[Ref.: #67860]	Enrichment culture duration	2 days
[Ref.: #67860]	Enrichment culture temperature	28 ̊C
[Ref.: #67860]	Isolation/enrichment procedure	H. obsoletus individuals were surface-sterilized using antibiotics (100 and 30 µg ml-1 of ampicillin and tetracycline, respectively), ground in sterile saline solution (9 % NaCl), plated on CCT agar plates with serial dilutions, and incubated at 28°C in the dark for 48 h.
* marker position based on {}

Isolation sources categories

#Host

#Arthropoda

#Insecta

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KX196280 (>99% sequence identity) for Dyella from Microbeatlas

Aquatic Samples	50
Soil Samples	87
Animal Samples	9
Plant Samples	17
Total Samples	163

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64932]	Frateuria sp. DHo strain Dho 16S ribosomal RNA gene, partial sequence	KX196280	1546	ENA	2219559 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67860]	Frateuria defendens DHo	GCA_001182895	contig	GenBank	2219559 tax ID

[Ref.: #67860]

GC-content

68.6 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #64932]

Culture collection no.

DSM 106169, NCCB 100648

[Ref.: #111091]

SI-ID 403710

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Frateuria defendens sp. nov., bacterium isolated from the yellows grapevine's disease vector Hyalesthes obsoletus.	Lidor O, Santos-Garcia D, Mozes-Daube N, Naor V, Cohen E, Iasur-Kruh L, Bahar O, Zchori-Fein E	Int J Syst Evol Microbiol	10.1099/ijsem.0.003305	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#64932

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106169

#67860

Ofir Lidor, Diego Santos-Garcia, Netta Mozes-Daube, Vered Naor, Eyal Cohen, Lilach Iasur-Kruh, Ofir Bahar, Einat Zchori-Fein: Frateuria defendens sp. nov., bacterium isolated from the yellows grapevine's disease vector Hyalesthes obsoletus. IJSEM 69: 1281 - 1287 2019 ( DOI 10.1099/ijsem.0.003305 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#111091

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403710.1 )

* These data were automatically processed and therefore are not curated

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