Name: Actinoplanes sediminis M4147
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158014

Type strain:

Species: Actinoplanes sediminis

Strain Designation: M4147

Culture col. no.: DSM 100965

Strain history: <- Q. Xie,Inst. of Tropical Bioscience and Biotechnology, Haikou,China; M4147

NCBI tax ID(s): 1734445 (species)

SI-ID 401569

DSM 100965

Special Collections

Section

Actinoplanes sediminis M4147 is an aerobe, spore-forming, Gram-positive bacterium that builds substrate hyphae and was isolated from sediment.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Actinoplanes*
	Species	**Actinoplanes sediminis**
	Full Scientific Name (LPSN)	Actinoplanes sediminis Qu et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65514]	Gram stain	positive

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Colony color

yellowish-orange

[Ref.: #65514]	Pigment production	yes
[Ref.: #65514]	Pigment name	soluble pigment

[Ref.: #65514]	Multicellular complex forming ability	yes
[Ref.: #65514]	Multicellular complex name	substrate hyphae

Multimedia content

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Caption:

Medium 83 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

CZAPEK PEPTONE AGAR (DSMZ Medium 83)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ISP 2

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Culture medium growth

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Culture medium

ISP 6

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Culture medium growth

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Culture medium

ATCC 172

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Culture medium growth

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Culture medium

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Culture medium growth

		Temperature
[Ref.: #64587]	growth	28 °C
[Ref.: #65514]	growth	16-37 °C
[Ref.: #65514]	optimum	28 °C

	pH	Kind of pH		pH
[Ref.: #65514]			optimum	7.0
[Ref.: #65514]			growth	5.5-9.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

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Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65514]		NaCl		growth	0-4	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65514]	cellobiose ChEBI	+	carbon source
[Ref.: #65514]	cellulose ChEBI	-	hydrolysis
[Ref.: #65514]	D-fructose ChEBI	+	carbon source
[Ref.: #65514]	D-galactose ChEBI	-	carbon source
[Ref.: #65514]	D-glucose ChEBI	+	carbon source
[Ref.: #65514]	D-mannitol ChEBI	-	carbon source
[Ref.: #65514]	D-mannose ChEBI	-	carbon source
[Ref.: #65514]	D-xylose ChEBI	-	carbon source
[Ref.: #65514]	esculin ChEBI	-	hydrolysis
[Ref.: #65514]	gelatin ChEBI	-	hydrolysis
[Ref.: #65514]	glycine ChEBI	+	nitrogen source
[Ref.: #65514]	L-arabinose ChEBI	+	carbon source
[Ref.: #65514]	L-arginine ChEBI	+	nitrogen source
[Ref.: #65514]	L-asparagine ChEBI	+	nitrogen source
[Ref.: #65514]	L-histidine ChEBI	+	nitrogen source
[Ref.: #65514]	L-lysine ChEBI	+	nitrogen source
[Ref.: #65514]	L-phenylalanine ChEBI	-	nitrogen source
[Ref.: #65514]	L-rhamnose ChEBI	-	carbon source
[Ref.: #65514]	L-sorbose ChEBI	-	carbon source
[Ref.: #65514]	L-tyrosine ChEBI	-	nitrogen source
[Ref.: #65514]	lactose ChEBI	+	carbon source
[Ref.: #65514]	maltose ChEBI	+	carbon source
[Ref.: #65514]	myo-inositol ChEBI	-	carbon source
[Ref.: #65514]	nitrate ChEBI	+	reduction
[Ref.: #65514]	raffinose ChEBI	-	carbon source
[Ref.: #65514]	raffinose ChEBI	+	carbon source
[Ref.: #65514]	salicin ChEBI	+	carbon source
[Ref.: #65514]	starch ChEBI	+	hydrolysis
[Ref.: #65514]	sucrose ChEBI	+	carbon source
[Ref.: #65514]	urea ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65514]		hydrogen sulfide ChEBI	no
[Ref.: #65514]		melanin ChEBI	no

Fatty acid profile

Metadata FA analysis

Reference

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Fatty acid	Percentage
C17:0	31.8
C16:0 anteiso	16.2
C17:0 anteiso	10.9
C16:0 iso	8.1
C15:0 anteiso	5.9
C16:0 10-methyl	5.8
C14:0 9-methyl	5.4
C15:0 iso	4.7
C15:0	3.5
C17:1ω10c	2
C14:0	1.9
C17:0 iso	1.7
C16:0	1.1
C16:1ω9c	0.9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64587]	Sample type/isolated from	sediment
[Ref.: #64587]	Geographic location (country and/or sea, region)	Syroy, Megas Gialos (37° 25.9' N, 24° 56.3' E)
[Ref.: #64587]	Country	Greece
[Ref.: #64587]	Country ISO 3 Code	GRC
[Ref.: #64587]	Continent	Europe
[Ref.: #64587]	Geographic location	41.3167°/33.3833°

[Ref.: #65514]	Sample type/isolated from	sediment sample
[Ref.: #65514]	Geographic location (country and/or sea, region)	Megas Gialos, Syros
[Ref.: #65514]	Country	Greece
[Ref.: #65514]	Country ISO 3 Code	GRC
[Ref.: #65514]	Continent	Europe
[Ref.: #65514]	Geographic location	37.4317°/24.9383°
[Ref.: #65514]	Enrichment culture	M4
[Ref.: #65514]	Enrichment culture composition	supplemented with potassium dichromate (30 ml/l), novobiocin (5 mg/l) and nystatin (30 mg/l).
[Ref.: #65514]	Enrichment culture duration	4 weeks
[Ref.: #65514]	Enrichment culture temperature	28 ̊C
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64587]	Actinoplanes sediminis strain M4I47 16S ribosomal RNA gene, partial sequence	KR347172	1492	GenBank ENA	1734445 tax ID

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GC-content

71.5 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

DSM 100965

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SI-ID 401569

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinoplanes sediminis sp. nov., isolated from marine sediment.	Qu Z, Bao XD, Xie QY, Zhao YX, Yan B, Dai HF, Chen HQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002451	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#64587

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100965

#65514

Zhi Qu, Xiao-dong Bao, Qing-yi Xie, You-xing Zhao, Bing Yan, Hao-fu Dai and Hui-Qin Chen: Actinoplanes sediminis sp. nov., isolated from marine sediment. IJSEM 68: 71 - 75 2018 ( DOI 10.1099/ijsem.0.002451 , PubMed 29125458 )

#110861

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401569.1 )

* These data were automatically processed and therefore are not curated

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