Name: Actinoplanes sediminis M4147
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158014

Type strain:

Species: Actinoplanes sediminis

Strain Designation: M4147

Culture col. no.: DSM 100965

Strain history: <- Q. Xie,Inst. of Tropical Bioscience and Biotechnology, Haikou,China; M4147

NCBI tax ID(s): 1734445 (species)

Section

Actinoplanes sediminis M4147 is an aerobe, spore-forming, mesophilic Actinobacterium that builds substrate hyphae and was isolated from sediment.

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	15-12-2021 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Actinobacteria
	Class	Actinobacteria
	Order	Micromonosporales
	Family	Micromonosporaceae
	Genus	Actinoplanes
	Species	Actinoplanes sediminis
	Full Scientific Name (PNU)	Actinoplanes sediminis Qu et al. 2018

Information on morphological and physiological properties Morphology

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Gram stain

positive

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Colony color

yellowish-orange

[Ref.: #65514]	Pigment production	yes
[Ref.: #65514]	Pigment name	soluble pigment

[Ref.: #65514]	Multicellular complex forming ability	yes
[Ref.: #65514]	Multicellular complex name	substrate hyphae

Multimedia content

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Caption:

Medium 83 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

CZAPEK PEPTONE AGAR (DSMZ Medium 83)

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Culture medium growth

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Culture medium link

Medium recipe at BacMedia

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Culture medium composition

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Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

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Culture medium growth

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Culture medium link

Medium recipe at BacMedia

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Culture medium composition

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at BacMedia

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Culture medium composition

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Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

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Culture medium growth

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Culture medium link

Medium recipe at BacMedia

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Culture medium composition

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Culture medium

ISP 2

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Culture medium growth

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Culture medium

ISP 6

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Culture medium growth

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Culture medium

ATCC 172

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Culture medium growth

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Culture medium

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Culture medium growth

		Temperature
[Ref.: #64587]	growth	28 °C
[Ref.: #65514]	growth	16-37 °C
[Ref.: #65514]	optimum	28 °C

[Ref.: #64587]	Temperature range	mesophilic
[Ref.: #65514]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65514]			optimum	7.0
[Ref.: #65514]			growth	5.5-9.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

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Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65514]		NaCl		growth	0-4	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65514]	cellobiose ChEBI	+	carbon source
[Ref.: #65514]	cellulose ChEBI	-	hydrolysis
[Ref.: #65514]	D-fructose ChEBI	+	carbon source
[Ref.: #65514]	D-galactose ChEBI	-	carbon source
[Ref.: #65514]	D-glucose ChEBI	+	carbon source
[Ref.: #65514]	D-mannitol ChEBI	-	carbon source
[Ref.: #65514]	D-mannose ChEBI	-	carbon source
[Ref.: #65514]	D-xylose ChEBI	-	carbon source
[Ref.: #65514]	esculin ChEBI	-	hydrolysis
[Ref.: #65514]	gelatin ChEBI	-	hydrolysis
[Ref.: #65514]	glycine ChEBI	+	nitrogen source
[Ref.: #65514]	L-arabinose ChEBI	+	carbon source
[Ref.: #65514]	L-arginine ChEBI	+	nitrogen source
[Ref.: #65514]	L-asparagine ChEBI	+	nitrogen source
[Ref.: #65514]	L-histidine ChEBI	+	nitrogen source
[Ref.: #65514]	L-lysine ChEBI	+	nitrogen source
[Ref.: #65514]	L-phenylalanine ChEBI	-	nitrogen source
[Ref.: #65514]	L-rhamnose ChEBI	-	carbon source
[Ref.: #65514]	L-sorbose ChEBI	-	carbon source
[Ref.: #65514]	L-tyrosine ChEBI	-	nitrogen source
[Ref.: #65514]	lactose ChEBI	+	carbon source
[Ref.: #65514]	maltose ChEBI	+	carbon source
[Ref.: #65514]	myo-inositol ChEBI	-	carbon source
[Ref.: #65514]	nitrate ChEBI	+	reduction
[Ref.: #65514]	raffinose ChEBI	-	carbon source
[Ref.: #65514]	raffinose ChEBI	+	carbon source
[Ref.: #65514]	salicin ChEBI	+	carbon source
[Ref.: #65514]	starch ChEBI	+	hydrolysis
[Ref.: #65514]	sucrose ChEBI	+	carbon source
[Ref.: #65514]	urea ChEBI	+	hydrolysis
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	Metabolite production	Metabolite
[Ref.: #65514]		hydrogen sulfide ChEBI
[Ref.: #65514]		melanin ChEBI

Fatty acid profile

Metadata FA analysis

Reference

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Fatty acid	Percentage
C17:0	31.8
C16:0 anteiso	16.2
C17:0 anteiso	10.9
C16:0 iso	8.1
C15:0 anteiso	5.9
C16:0 10-methyl	5.8
C14:0 9-methyl	5.4
C15:0 iso	4.7
C15:0	3.5
C17:1ω10c	2
C14:0	1.9
C17:0 iso	1.7
C16:0	1.1
C16:1ω9c	0.9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64587]	Sample type/isolated from	sediment
[Ref.: #64587]	Geographic location (country and/or sea, region)	Syroy, Megas Gialos (37° 25.9' N, 24° 56.3' E)
[Ref.: #64587]	Country	Greece
[Ref.: #64587]	Country ISO 3 Code	GRC
[Ref.: #64587]	Continent	Europe
[Ref.: #64587]	Geographic location	41.3167°/33.3833°

[Ref.: #65514]	Sample type/isolated from	sediment sample
[Ref.: #65514]	Geographic location (country and/or sea, region)	Megas Gialos, Syros
[Ref.: #65514]	Country	Greece
[Ref.: #65514]	Country ISO 3 Code	GRC
[Ref.: #65514]	Continent	Europe
[Ref.: #65514]	Geographic location	37.4317°/24.9383°
[Ref.: #65514]	Enrichment culture	M4
[Ref.: #65514]	Enrichment culture composition	supplemented with potassium dichromate (30 ml/l), novobiocin (5 mg/l) and nystatin (30 mg/l).
[Ref.: #65514]	Enrichment culture duration	4 weeks
[Ref.: #65514]	Enrichment culture temperature	28 ̊C

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64587]	Actinoplanes sediminis strain M4I47 16S ribosomal RNA gene, partial sequence	KR347172	1492	ENA	1734445 tax ID

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GC-content

71.5 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

DSM 100965

References

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

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Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100965

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Zhi Qu, Xiao-dong Bao, Qing-yi Xie, You-xing Zhao, Bing Yan, Hao-fu Dai and Hui-Qin Chen: Actinoplanes sediminis sp. nov., isolated from marine sediment. IJSEM 68: 71 - 75 2018 ( DOI 10.1099/ijsem.0.002451 , PubMed 29125458 )

* These data were automatically processed and therefore are not curated

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