Name: Nocardia yunnanensis DSM 46763
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 157981

Type strain:

Species: Nocardia yunnanensis

Culture col. no.: DSM 46763, JCM 30082, CFH S0054

Strain history: W.-J. Li CFH S0054.

NCBI tax ID(s): 2382165 (species)

SI-ID 400085

DSM 46763

Special Collections

Section

Nocardia yunnanensis DSM 46763 is an aerobe, heterotroph, Gram-positive bacterium that builds an aerial mycelium and was isolated from soil.

Gram-positive
rod-shaped
aerobe
heterotroph
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Nocardiaceae*
	Genus	*Nocardia*
	Species	**Nocardia yunnanensis**
	Full Scientific Name (LPSN)	Nocardia yunnanensis Zhang et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #68022]	Gram stain	positive

[Ref.: #68022]	Cell shape	rod-shaped

[Ref.: #69472]	Colony color	Colourless
[Ref.: #69472]	Cultivation medium used	ISP 4

[Ref.: #69472]	Colony color	Clay brown (8003)
[Ref.: #69472]	Cultivation medium used	ISP 7

[Ref.: #69472]	Colony color	Brown beige (1011), signal brown (8002)
[Ref.: #69472]	Cultivation medium used	suter with tyrosine

[Ref.: #69472]	Colony color	Beige (1001)
[Ref.: #69472]	Cultivation medium used	ISP 2

[Ref.: #69472]	Colony color	Light ivory (1015), pastel yellow (1034)
[Ref.: #69472]	Cultivation medium used	ISP 6

[Ref.: #69472]	Colony color	Oyster white (1013)
[Ref.: #69472]	Cultivation medium used	ISP 3

[Ref.: #69472]	Colony color	Pastel yellow (1034)
[Ref.: #69472]	Cultivation medium used	ISP 5

[Ref.: #69472]	Colony color	Pastel yellow (1034)
[Ref.: #69472]	Cultivation medium used	suter without tyrosine

[Ref.: #69472]	Pigment production	no
[Ref.: #69472]	Pigment name	soluble pigment

[Ref.: #69472]	Multicellular complex forming ability	yes
[Ref.: #69472]	Multicellular complex name	Aerial mycelium
[Ref.: #69472]	Multicellular complex color	Signal white (9003)
[Ref.: #69472]	Medium Name (multicellularity)	ISP 2

[Ref.: #69472]	Multicellular complex forming ability	no
[Ref.: #69472]	Multicellular complex name	Aerial mycelium
[Ref.: #69472]	Medium Name (multicellularity)	ISP 3

[Ref.: #69472]	Multicellular complex forming ability	no
[Ref.: #69472]	Multicellular complex name	Aerial mycelium
[Ref.: #69472]	Medium Name (multicellularity)	ISP 4

[Ref.: #69472]	Multicellular complex forming ability	yes
[Ref.: #69472]	Multicellular complex name	Aerial mycelium
[Ref.: #69472]	Multicellular complex color	Signal white (9003)
[Ref.: #69472]	Medium Name (multicellularity)	ISP 5

[Ref.: #69472]	Multicellular complex forming ability	no
[Ref.: #69472]	Multicellular complex name	Aerial mycelium
[Ref.: #69472]	Medium Name (multicellularity)	ISP 6

[Ref.: #69472]	Multicellular complex forming ability	yes
[Ref.: #69472]	Multicellular complex name	Aerial mycelium
[Ref.: #69472]	Multicellular complex color	Signal white (9003)
[Ref.: #69472]	Medium Name (multicellularity)	ISP 7

[Ref.: #69472]	Multicellular complex forming ability	no
[Ref.: #69472]	Multicellular complex name	Aerial mycelium
[Ref.: #69472]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69472]	Multicellular complex forming ability	no
[Ref.: #69472]	Multicellular complex name	Aerial mycelium
[Ref.: #69472]	Medium Name (multicellularity)	suter without tyrosine

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64554]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #64554]

Culture medium growth

[Ref.: #64554]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64554]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #64554]			growth	28 °C
[Ref.: #67770]			growth	28 °C

	pH	Kind of pH		pH
[Ref.: #68022]			growth	5.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68022]

Oxygen tolerance

aerobe

[Ref.: #68022]

Nutrition type

heterotroph

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68022]		NaCl		growth	0.0-5.0	%(w/v)
[Ref.: #69472]		NaCl		growth	0-2.5	%

[Ref.: #67770]	Observation	quinones: MK-8(H₄, ω-cycl)
[Ref.: #68022]	Observation	form an extensively branched substrate mycelium that fragments into irregular rod-shaped elements
[Ref.: #68022]	Observation	The major polar lipids are phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylinositol, phosphatidylinositol mannoside, unknown phospholipids and unknown lipids
[Ref.: #68022]	Observation	The diagnostic diamino acid of the peptidoglycan is meso-diaminopimelic acid
[Ref.: #68022]	Observation	The whole-cell sugar pattern consists of arabinose, galactose, glucose, fructose, ribose and mannose
[Ref.: #68022]	Observation	The predominant respiratory quinone is MK-8 (H4w-cycl)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69472]	arabinose ChEBI	+	growth
[Ref.: #68022]	cellulose ChEBI	-	degradation
[Ref.: #69472]	cellulose ChEBI	-	growth
[Ref.: #68022]	cysteine ChEBI	-	nitrogen source
[Ref.: #68022]	D-fructose ChEBI	+	growth
[Ref.: #68022]	D-fructose ChEBI	+	carbon source
[Ref.: #68022]	D-fructose ChEBI	+	energy source
[Ref.: #68022]	D-galactose ChEBI	+	growth
[Ref.: #68022]	D-galactose ChEBI	+	carbon source
[Ref.: #68022]	D-galactose ChEBI	+	energy source
[Ref.: #68022]	D-glucose ChEBI	+	growth
[Ref.: #68022]	D-glucose ChEBI	+	carbon source
[Ref.: #68022]	D-glucose ChEBI	+	energy source
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68022]	D-mannitol ChEBI	-	growth
[Ref.: #68022]	D-mannitol ChEBI	-	carbon source
[Ref.: #68022]	D-mannitol ChEBI	-	energy source
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68022]	D-mannose ChEBI	+	growth
[Ref.: #68022]	D-mannose ChEBI	+	carbon source
[Ref.: #68022]	D-mannose ChEBI	+	energy source
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68022]	D-sorbitol ChEBI	-	growth
[Ref.: #68022]	D-sorbitol ChEBI	-	carbon source
[Ref.: #68022]	D-sorbitol ChEBI	-	energy source
[Ref.: #68022]	D-trehalose ChEBI	-	growth
[Ref.: #68022]	D-trehalose ChEBI	-	carbon source
[Ref.: #68022]	D-trehalose ChEBI	-	energy source
[Ref.: #68022]	D-xylose ChEBI	+	growth
[Ref.: #68022]	D-xylose ChEBI	+	carbon source
[Ref.: #68022]	D-xylose ChEBI	+	energy source
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69472]	fructose ChEBI	+/-	growth
[Ref.: #68022]	gelatin ChEBI	+	degradation
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69472]	glucose ChEBI	+	growth
[Ref.: #68022]	glycine ChEBI	+	nitrogen source
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69472]	inositol ChEBI	+	growth
[Ref.: #68022]	L-alanine 4-nitroanilide	+	nitrogen source
[Ref.: #68022]	L-arabinose ChEBI	+	growth
[Ref.: #68022]	L-arabinose ChEBI	+	carbon source
[Ref.: #68022]	L-arabinose ChEBI	+	energy source
[Ref.: #68022]	L-arginine ChEBI	-	nitrogen source
[Ref.: #68022]	L-asparagine ChEBI	-	nitrogen source
[Ref.: #68022]	L-glutamate ChEBI	-	nitrogen source
[Ref.: #68022]	L-lysine ChEBI	-	nitrogen source
[Ref.: #68022]	L-ornithine ChEBI	+	nitrogen source
[Ref.: #68022]	L-serine ChEBI	+	nitrogen source
[Ref.: #68022]	L-threonine ChEBI	+	nitrogen source
[Ref.: #68022]	L-tyrosine ChEBI	+	nitrogen source
[Ref.: #68022]	L-valine ChEBI	+	nitrogen source
[Ref.: #68022]	lactose ChEBI	-	growth
[Ref.: #68022]	lactose ChEBI	-	carbon source
[Ref.: #68022]	lactose ChEBI	-	energy source
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68022]	maltose ChEBI	+	growth
[Ref.: #68022]	maltose ChEBI	+	carbon source
[Ref.: #68022]	maltose ChEBI	+	energy source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69472]	mannose ChEBI	-	growth
[Ref.: #68022]	nitrate ChEBI	-	reduction
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #68022]	phenylalanine ChEBI	-	nitrogen source
[Ref.: #68022]	raffinose ChEBI	-	growth
[Ref.: #68022]	raffinose ChEBI	-	carbon source
[Ref.: #68022]	raffinose ChEBI	-	energy source
[Ref.: #69472]	raffinose ChEBI	-	growth
[Ref.: #68022]	rhamnose ChEBI	-	growth
[Ref.: #68022]	rhamnose ChEBI	-	carbon source
[Ref.: #68022]	rhamnose ChEBI	-	energy source
[Ref.: #69472]	rhamnose ChEBI	-	growth
[Ref.: #68022]	ribose ChEBI	-	growth
[Ref.: #68022]	ribose ChEBI	-	carbon source
[Ref.: #68022]	ribose ChEBI	-	energy source
[Ref.: #68022]	sodium malate	-	growth
[Ref.: #68022]	sodium malate	-	carbon source
[Ref.: #68022]	sodium malate	-	energy source
[Ref.: #68022]	sodium succinate ChEBI	-	growth
[Ref.: #68022]	sodium succinate ChEBI	-	carbon source
[Ref.: #68022]	sodium succinate ChEBI	-	energy source
[Ref.: #68022]	sorbose ChEBI	-	growth
[Ref.: #68022]	sorbose ChEBI	-	carbon source
[Ref.: #68022]	sorbose ChEBI	-	energy source
[Ref.: #68022]	starch ChEBI	-	degradation
[Ref.: #68022]	sucrose ChEBI	-	growth
[Ref.: #68022]	sucrose ChEBI	-	carbon source
[Ref.: #68022]	sucrose ChEBI	-	energy source
[Ref.: #69472]	sucrose ChEBI	+/-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68022]	tween 20 ChEBI	-	degradation
[Ref.: #68022]	tween 40 ChEBI	-	degradation
[Ref.: #68022]	tween 60 ChEBI	-	degradation
[Ref.: #68022]	tween 80 ChEBI	-	degradation
[Ref.: #68022]	urea ChEBI	+	degradation
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #68022]	xylitol ChEBI	-	growth
[Ref.: #68022]	xylitol ChEBI	-	carbon source
[Ref.: #68022]	xylitol ChEBI	-	energy source
[Ref.: #69472]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity
[Ref.: #68022]	amikacin ChEBI	yes
[Ref.: #68022]	chloramphenicol ChEBI	yes
[Ref.: #68022]	erythromycin ChEBI	yes
[Ref.: #68022]	kanamycin ChEBI	yes
[Ref.: #68022]	neomycin ChEBI	yes
[Ref.: #68022]	rifampicin ChEBI	yes
[Ref.: #68022]	tetracycline ChEBI	yes
[Ref.: #68022]	tobramycin ChEBI	yes

	Metabolite production	Metabolite	Production
[Ref.: #68022]		hydrogen sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68022]	catalase	+	1.11.1.6
[Ref.: #68022]	cytochrome oxidase	-	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #68022]

Fatty acid	Percentage
C16:0	39.5
C18:1 w9c	20.1
C16:1 w7c / C16:1 w6c	18
C18:0 10-methly	9.4
C14:0	2.5
C17:1 w8c	2.5
C18:0	2.4
C17:0	1.1
C17:0 10-methyl	0.8
C19:1 w9c / C19:1 w11c	0.4

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69472]	3965	+	-	-	+	-	-	+	-	-	+	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69472]	6149	not determinedn.d.	+	+	+	+	+	+	+/-	-	-	+	+	-	+/-	-	+	+	-	+/-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64554]	Sample type/isolated from	soil
[Ref.: #64554]	Geographic location (country and/or sea, region)	Xiaokongshan, Tengchong, Yunnan Province
[Ref.: #64554]	Country	China
[Ref.: #64554]	Country ISO 3 Code	CHN
[Ref.: #64554]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil from Xiaokongshan in Tengchong
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yunnan Province, south-west China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #68022]	Sample type/isolated from	soil sample
[Ref.: #68022]	Geographic location (country and/or sea, region)	Xiaokongshan in Tengchong, Yunnan Province
[Ref.: #68022]	Country	China
[Ref.: #68022]	Country ISO 3 Code	CHN
[Ref.: #68022]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64554]	Nocardia yunnanensis strain CFH S0054 16S ribosomal RNA gene, partial sequence	KY039319	1523	GenBank ENA	2382165 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Nocardia yunnanensis CFH S0054	GCA_003626895	chromosome	GenBank ENA	2382165 tax ID

[Ref.: #64554]	GC-content	68.4 mol%	sequence analysis
[Ref.: #68022]	GC-content	68.4 mol%	genome sequence analysis

Availability in culture collections External links

[Ref.: #64554]

Culture collection no.

DSM 46763, JCM 30082, CFH S0054

[Ref.: #110829]

SI-ID 400085

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardia terrae sp. nov., an actinomycete isolated from soil in Thailand.	Kanchanasin P, Yuki M, Kudo T, Ohkuma M, Phongsopitanun W, Tanasupawat S	Arch Microbiol	10.1007/s00203-020-02107-3	2020	*
Phylogeny	Nocardia yunnanensis sp. nov., an actinomycete isolated from a soil sample.	Zhang JX, Ming H, Zhao ZL, Ji WL, Chang XL, Zhang LY, Cheng LJ, Meng XL, Li WJ, Nie GX	Int J Syst Evol Microbiol	10.1099/ijsem.0.003600	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#64554

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46763

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68022

Jian-Xin Zhang, Hong Ming, Zhuo-Li Zhao, Wei-Li Ji, Xu-Lu Chang, Ling-Yu Zhang, Li-Jiao Cheng, Xiao-Lin Meng, Wen-Jun Li, Guo-Xing Nie: Nocardia yunnanensis sp. nov., an actinomycete isolated from a soil sample. IJSEM 69: 3116 - 3120 2019 ( DOI 10.1099/ijsem.0.003600 )

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69472

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#110829

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400085.1 )

* These data were automatically processed and therefore are not curated

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