Name: Acetivibrio mesophilus N2K1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 157972

Type strain:

Species: Acetivibrio mesophilus

Strain Designation: N2K1

Culture col. no.: DSM 107956, CECT 9704

Strain history: <- R. Rettenmaier, TU Munich, Chair of Microbiology, Freising-Weihenstephan, Germany; N2K1 <- R. Rettenmaier; {2018}

NCBI tax ID(s): 2487273 (species)

SI-ID 402063

DSM 107956

Special Collections

Section

When using BacDive for research please cite our paper

Acetivibrio mesophilus N2K1 is an anaerobe, spore-forming, thermophilic bacterium that was isolated from lab scale biogas plant fed with maize silage.

Gram-positive
rod-shaped
spore-forming
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Oscillospiraceae*
	Genus	*Acetivibrio*
	Species	**Acetivibrio mesophilus**
	Full Scientific Name (LPSN)	Acetivibrio mesophilus (Rettenmaier et al. 2019) Tindall 2019

Synonym

Hungateiclostridium mesophilum

Information on morphological and physiological properties Morphology

[Ref.: #68222]	Gram stain	positive

[Ref.: #68222]	Cell length	0.66-1.33

[Ref.: #68222]	Cell shape	rod-shaped

[Ref.: #68222]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64545]

Culture medium

ACETIVIBRIO MEDIUM (DSMZ Medium 122)

[Ref.: #64545]

Culture medium growth

[Ref.: #64545]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64545]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #64545]	growth	45 °C
[Ref.: #68222]	optimum	45 °C
[Ref.: #68222]	growth	30-50 °C

	pH	Kind of pH		pH
[Ref.: #68222]			optimum	7.5
[Ref.: #68222]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68222]	Oxygen tolerance	anaerobe
[Ref.: #125438]	Oxygen tolerance	anaerobe Confidence in %95.206
[Ref.: #125439]	Oxygen tolerance	anaerobe Confidence in %98.9

[Ref.: #68222]	Type of spore	endospore
[Ref.: #68222]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68222]		NaCl		growth	1.8	%(w/v)

[Ref.: #68222]	Observation	can adhere directly to cellulose fibre
[Ref.: #68222]	Observation	occur single or in pairs

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68222]	arabinose ChEBI	-	growth
[Ref.: #68222]	cellobiose ChEBI	+	growth
[Ref.: #68222]	cellulose ChEBI	+	growth
[Ref.: #68222]	fructose ChEBI	-	growth
[Ref.: #68222]	glucose ChEBI	-	growth
[Ref.: #68222]	lactose ChEBI	-	growth
[Ref.: #68222]	mannitol ChEBI	-	growth
[Ref.: #68222]	mannose ChEBI	-	growth
[Ref.: #68222]	ribose ChEBI	-	growth
[Ref.: #68222]	starch ChEBI	-	growth
[Ref.: #68222]	sucrose ChEBI	-	growth
[Ref.: #68222]	trehalose ChEBI	-	growth
[Ref.: #68222]	xylan ChEBI	-	growth
[Ref.: #68222]	xylose ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64545]	Sample type/isolated from	lab scale biogas plant fed with maize silage
[Ref.: #64545]	Geographic location (country and/or sea, region)	Freising
[Ref.: #64545]	Country	Germany
[Ref.: #64545]	Country ISO 3 Code	DEU
[Ref.: #64545]	Continent	Europe

[Ref.: #68222]	Sample type/isolated from	lab-scale biogas fermenter
[Ref.: #68222]	Geographic location (country and/or sea, region)	Freising
[Ref.: #68222]	Country	Germany
[Ref.: #68222]	Country ISO 3 Code	DEU
[Ref.: #68222]	Continent	Europe
[Ref.: #68222]	Geographic location	48.3580°/11.7175°
[Ref.: #68222]	Enrichment culture	GR20
[Ref.: #68222]	Enrichment culture temperature	37 ̊C
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Engineered	#Industrial	#Plant (Factory)
#Engineered	#Bioreactor	-
#Engineered	#Laboratory	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MK138666 (>99% sequence identity) for Acetivibrio from Microbeatlas

Aquatic Samples	246
Soil Samples	255
Animal Samples	227
Plant Samples	103
Total Samples	831

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64545]	Acetivibrio mesophilus strain N2K1 16S ribosomal RNA gene, partial sequence	MK138666	1412	GenBank ENA	2487273 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #68222]	Acetivibrio mesophilus N2K1	GCA_004102745	contig	GenBank ENA	2487273 tax ID
[Ref.: #66792]	Hungateiclostridium sp. N2K1	2487273.3	wgs	PATRIC	2487273 tax ID	*
[Ref.: #66792]	Acetivibrio mesophilus N2K1	2880951795	draft	JGI IMG/M	2487273 tax ID	*

[Ref.: #64545]	GC-content	38.36 mol%	sequence analysis
[Ref.: #68222]	GC-content	38.36 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Hungateiclostridium sp. N2K1 PATRIC: 2487273.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	59.899	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	yes	95.206	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	83.608	yes
[Ref.: #125438]	aerobic	aerobicⓘ	no	96.017	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	52.57	no
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	80.781	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Acetivibrio mesophilus N2K1 NCBI: GCA_004102745
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	85
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	84.7
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	variable	86.2
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	anaerobe	98.9

Availability in culture collections External links

[Ref.: #64545]

Culture collection no.

DSM 107956, CECT 9704

[Ref.: #110821]

SI-ID 402063

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hungateiclostridium mesophilum sp. nov., a mesophilic, cellulolytic and spore-forming bacterium isolated from a biogas fermenter fed with maize silage.	Rettenmaier R, Gerbaulet M, Liebl W, Zverlov VV	Int J Syst Evol Microbiol	10.1099/ijsem.0.003663	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#64545

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107956

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68222

Regina Rettenmaier, Martin Gerbaulet, Wolfgang Liebl and Vladimir V. Zverlov: Hungateiclostridium mesophilum sp. nov., a mesophilic, cellulolytic and spore-forming bacterium isolated from a biogas fermenter fed with maize silage. IJSEM 69: 3567 - 3573 2019 ( DOI 10.1099/ijsem.0.003663 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#110821

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402063.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Acetivibrio mesophilus in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Hungateiclostridium sp. N2K1

Acetivibrio mesophilus N2K1

Change proposal

Change proposal