Strain identifier

BacDive ID: 157972

Type strain: Yes

Species: Acetivibrio mesophilus

Strain Designation: N2K1

Culture col. no.: DSM 107956, CECT 9704

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General

@ref: 64545

BacDive-ID: 157972

DSM-Number: 107956

keywords: Bacteria, 16S sequence, genome sequence, thermophilic

description: Acetivibrio mesophilus N2K1 is a thermophilic bacterium that was isolated from lab scale biogas plant fed with maize silage.

strain history: <- R. Rettenmaier, BFLM, TU Munich, Freising-Weihenstephan, Germany; N2K1 <- R. Rettenmaier {2018}

doi: 10.13145/bacdive157972.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/firmicutes
  • domain: Bacteria
  • phylum: Firmicutes
  • class: Clostridia
  • order: Eubacteriales
  • family: Oscillospiraceae
  • genus: Acetivibrio
  • species: Acetivibrio mesophilus
  • full scientific name: Acetivibrio mesophilus (Rettenmaier et al. 2019) Tindall 2019
  • synonyms

    • @ref: 20215
    • synonym: Hungateiclostridium mesophilum

@ref: 64545

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Hungateiclostridiaceae

genus: Acetivibrio

species: Acetivibrio mesophilus

full scientific name: Acetivibrio mesophilus (Rettenmaier et al. 2019) Tindall 2019

strain designation: N2K1

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 64545
  • name: HUNGATEICLOSTRIDIUM MEDIUM (DSMZ Medium 122), anaerobic
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium122.pdf

culture temp

  • @ref: 64545
  • growth: positive
  • type: growth
  • temperature: 45
  • range: thermophilic

Isolation, sampling and environmental information

isolation

  • @ref: 64545
  • sample type: lab scale biogas plant fed with maize silage
  • geographic location: Freising
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Engineered#Industrial#Plant (Factory)
#Engineered#Bioreactor
#Engineered#Laboratory

Sequence information

16S sequences

  • @ref: 64545
  • description: Hungateiclostridium mesophilum strain N2K1 16S ribosomal RNA gene, partial sequence
  • accession: MK138666
  • length: 1412
  • database: ena
  • NCBI tax ID: 2487273

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Hungateiclostridium mesophilum N2K1GCA_004102745contigncbi2487273
66792Hungateiclostridium sp. N2K12487273.3wgspatric2487273

GC content

  • @ref: 64545
  • GC-content: 38.36
  • method: sequence analysis

External links

@ref: 64545

culture collection no.: DSM 107956, CECT 9704

Reference

@idauthorstitledoi/urlcatalogue
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
64545Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-107956Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107956)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes