Strain identifier
BacDive ID: 157972
Type strain: 
Species: Acetivibrio mesophilus
Strain Designation: N2K1
Culture col. no.: DSM 107956, CECT 9704
General
@ref: 64545
BacDive-ID: 157972
DSM-Number: 107956
keywords: Bacteria, 16S sequence, genome sequence, thermophilic
description: Acetivibrio mesophilus N2K1 is a thermophilic bacterium that was isolated from lab scale biogas plant fed with maize silage.
strain history: <- R. Rettenmaier, BFLM, TU Munich, Freising-Weihenstephan, Germany; N2K1 <- R. Rettenmaier {2018}
doi: 10.13145/bacdive157972.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/firmicutes
- domain: Bacteria
- phylum: Firmicutes
- class: Clostridia
- order: Eubacteriales
- family: Oscillospiraceae
- genus: Acetivibrio
- species: Acetivibrio mesophilus
- full scientific name: Acetivibrio mesophilus (Rettenmaier et al. 2019) Tindall 2019
synonyms
- @ref: 20215
- synonym: Hungateiclostridium mesophilum
@ref: 64545
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Hungateiclostridiaceae
genus: Acetivibrio
species: Acetivibrio mesophilus
full scientific name: Acetivibrio mesophilus (Rettenmaier et al. 2019) Tindall 2019
strain designation: N2K1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 64545
- name: HUNGATEICLOSTRIDIUM MEDIUM (DSMZ Medium 122), anaerobic
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium122.pdf
culture temp
- @ref: 64545
- growth: positive
- type: growth
- temperature: 45
- range: thermophilic
Isolation, sampling and environmental information
isolation
- @ref: 64545
- sample type: lab scale biogas plant fed with maize silage
- geographic location: Freising
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Engineered | #Industrial | #Plant (Factory) |
| #Engineered | #Bioreactor | |
| #Engineered | #Laboratory |
Sequence information
16S sequences
- @ref: 64545
- description: Hungateiclostridium mesophilum strain N2K1 16S ribosomal RNA gene, partial sequence
- accession: MK138666
- length: 1412
- database: ena
- NCBI tax ID: 2487273
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Hungateiclostridium mesophilum N2K1 | GCA_004102745 | contig | ncbi | 2487273 |
| 66792 | Hungateiclostridium sp. N2K1 | 2487273.3 | wgs | patric | 2487273 |
GC content
- @ref: 64545
- GC-content: 38.36
- method: sequence analysis
External links
@ref: 64545
culture collection no.: DSM 107956, CECT 9704
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | |
| 64545 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-107956 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107956) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |