Name: Peredibacter starrii A3.12
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1578

Type strain:

Species: Peredibacter starrii

Strain Designation: A3.12

Culture col. no.: DSM 17039, ATCC 15145, NCCB 72004

Strain history: <- Y. Davidov <- ATCC <- H. Stolp and M. P. Starr; A3.12

NCBI tax ID(s): 28202 (species)

SI-ID 45579

ATCC 15145, NCIMB 9561, DSM50758, NCIB 9561, LMD 72.4, NCCB 72004, DSM 17039

Section

Peredibacter starrii A3.12 is a mesophilic bacterium that was isolated from soil.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Oligoflexia*
	Order	*Bacteriovoracales*
	Family	Peredibacteraceae
	Genus	*Peredibacter*
	Species	**Peredibacter starrii**
	Full Scientific Name (LPSN)	Peredibacter starrii (Seidler et al. 1972) Davidov and Jurkevitch 2004

	Synonym	Bdellovibrio starrii
	Synonym	Bacteriovorax starrii

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6700]

Culture medium

PEREDIBACTER (DN) MEDIUM (DSMZ Medium 1012)

[Ref.: #6700]

Culture medium growth

[Ref.: #6700]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6700]

Culture medium composition

expand / minimize

[Ref.: #6700]

Culture medium

BDELLOVIBRIO MEDIUM (DSMZ Medium 257)

[Ref.: #6700]

Culture medium growth

[Ref.: #6700]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6700]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6700]			growth	30 °C

[Ref.: #6700]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6700]	Sample type/isolated from	soil
[Ref.: #6700]	Geographic location (country and/or sea, region)	California
[Ref.: #6700]	Country	USA
[Ref.: #6700]	Country ISO 3 Code	USA
[Ref.: #6700]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF084852 (>99% sequence identity) for Peredibacter starrii subclade from Microbeatlas

Aquatic Samples	197
Soil Samples	305
Animal Samples	36
Plant Samples	51
Total Samples	589

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6700]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6700]	Bdellovibrio starrii 16S ribosomal RNA gene, partial sequence	AF084852	1457	ENA	28202 tax ID
[Ref.: #20218]	Bdellovibrio starrii 16S rRNA gene, partial cds	M61231	518	ENA	28202 tax ID	*

[Ref.: #6700]

GC-content

43.5 mol%

Availability in culture collections External links

[Ref.: #6700]

Culture collection no.

DSM 17039, ATCC 15145, NCCB 72004

[Ref.: #71223]

SI-ID 45579

Literature:

Topic	Title	Authors	Journal	DOI	Year
Proteome	Bacterial predators possess unique membrane lipid structures.	Muller FD, Beck S, Strauch E, Linscheid MW	Lipids	10.1007/s11745-011-3614-5	2011	*
Phylogeny	Phylogenetic relationships amongst the saltwater members of the genus Bacteriovorax using rpoB sequences and reclassification of Bacteriovorax stolpii as Bacteriolyticum stolpii gen. nov., comb. nov.	Pineiro SA, Williams HN, Stine OC	Int J Syst Evol Microbiol	10.1099/ijs.0.65710-0	2008	*
Phylogeny	Diversity and evolution of Bdellovibrio-and-like organisms (BALOs), reclassification of Bacteriovorax starrii as Peredibacter starrii gen. nov., comb. nov., and description of the Bacteriovorax-Peredibacter clade as Bacteriovoracaceae fam. nov.	Davidov Y, Jurkevitch E	Int J Syst Evol Microbiol	10.1099/ijs.0.02978-0	2004	*
Phylogeny	A proposal for the reclassification of Bdellovibrio stolpii and Bdellovibrio starrii into a new genus, Bacteriovorax gen. nov. as Bacteriovorax stolpii comb. nov. and Bacteriovorax starrii comb. nov., respectively.	Baer ML, Ravel J, Chun J, Hill RT, Williams HN	Int J Syst Evol Microbiol	10.1099/00207713-50-1-219	2000	*
Phylogeny	Further taxonomic characterization of the genus Bdellovibrio.	Torrella F, Guerrero R, Seidler RJ	Can J Microbiol	10.1139/m78-222	1978	*

References

#6700

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17039

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#71223

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45579.1 )

* These data were automatically processed and therefore are not curated

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