Name: Bifidobacterium imperatoris LMG 30297
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 157230

Type strain:

Species: Bifidobacterium imperatoris

Culture col. no.: LMG 30297, CCUG 70961, JCM 32708

Strain history: LMG 30297 <-- M. Ventura; Dept. of Chem., Univ. of Parma, Italy; Tam1G.

NCBI tax ID(s): 2020965 (species)

SI-ID 411730

CCUG 70961

Section

Bifidobacterium imperatoris LMG 30297 is an anaerobe, mesophilic bacterium that was isolated from Faeces,Emperor Tamarin.

anaerobe
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Bifidobacteriales*
	Family	*Bifidobacteriaceae*
	Genus	*Bifidobacterium*
	Species	**Bifidobacterium imperatoris**
	Full Scientific Name (LPSN)	Bifidobacterium imperatoris Lugli et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %91.439

[Ref.: #63770]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #63770]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #63770]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #63770]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.427

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.966
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #63770]	Sample type/isolated from	Faeces,Emperor Tamarin
[Ref.: #63770]	Sampling date	2014-09-16
[Ref.: #63770]	Geographic location (country and/or sea, region)	Emilia Romagna,Parma
[Ref.: #63770]	Country	Italy
[Ref.: #63770]	Country ISO 3 Code	ITA
[Ref.: #63770]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Stool sample of an emperor tamarin (Saguinus imperator)
[Ref.: #67770]	Host species	Saguinus imperator
[Ref.: #67770]	Country	Italy
[Ref.: #67770]	Country ISO 3 Code	ITA
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Primates
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bifidobacterium imperatoris Tam1G	GCA_002860405	contig	GenBank	2020965 tax ID
[Ref.: #66792]	Bifidobacterium imperatoris JCM 32708	GCA_017357045	chromosome	GenBank	2020965 tax ID	*
[Ref.: #66792]	Bifidobacterium imperatoris strain JCM 32708	2020965.6	complete	PATRIC	2020965 tax ID	*

[Ref.: #67770]

GC-content

56.13 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bifidobacterium imperatoris JCM 32708 NCBI: GCA_017357045.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bifidobacterium imperatoris strain JCM 32708 PATRIC: 2020965.6
[Ref.: #69480]	motile	no	94.036	no
[Ref.: #69480]	gram-positive	yes	94.155	no
[Ref.: #69480]	anaerobic	yes	97.991	yes
[Ref.: #69480]	aerobic	no	96.151	yes
[Ref.: #69480]	halophile	no	83.245	no
[Ref.: #69480]	spore-forming	no	96.602	no
[Ref.: #69480]	glucose-util	yes	86.942	no
[Ref.: #69480]	flagellated	no	96.438	no
[Ref.: #69480]	thermophile	no	93.846	no
[Ref.: #69480]	glucose-ferment	yes	85.302	no

Availability in culture collections External links

[Ref.: #63770]

Culture collection no.

LMG 30297, CCUG 70961, JCM 32708

[Ref.: #110329]

SI-ID 411730

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Five novel bifidobacterial species isolated from faeces of primates in two Czech zoos: Bifidobacterium erythrocebi sp. nov., Bifidobacterium moraviense sp. nov., Bifidobacterium oedipodis sp. nov., Bifidobacterium olomucense sp. nov. and Bifidobacterium panos sp. nov.	Neuzil-Bunesova V, Lugli GA, Modrackova N, Vlkova E, Bolechova P, Burtscher J, Longhi G, Mancabelli L, Killer J, Domig K, Ventura M	Int J Syst Evol Microbiol	10.1099/ijsem.0.004573	2020	*
Phylogeny	Characterization of the phylogenetic diversity of five novel species belonging to the genus Bifidobacterium: Bifidobacterium castoris sp. nov., Bifidobacterium callimiconis sp. nov., Bifidobacterium goeldii sp. nov., Bifidobacterium samirii sp. nov. and Bifidobacterium dolichotidis sp. nov.	Duranti S, Lugli GA, Napoli S, Anzalone R, Milani C, Mancabelli L, Alessandri G, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003306	2019	*
Phylogeny	Phylogenetic classification of six novel species belonging to the genus Bifidobacterium comprising Bifidobacterium anseris sp. nov., Bifidobacterium criceti sp. nov., Bifidobacterium imperatoris sp. nov., Bifidobacterium italicum sp. nov., Bifidobacterium margollesii sp. nov. and Bifidobacterium parmae sp. nov.	Lugli GA, Mangifesta M, Duranti S, Anzalone R, Milani C, Mancabelli L, Alessandri G, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M	Syst Appl Microbiol	10.1016/j.syapm.2018.01.002	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#63770 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 70961

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#110329

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID411730.1 )

* These data were automatically processed and therefore are not curated

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Bifidobacterium imperatoris JCM 32708

Bifidobacterium imperatoris strain JCM 32708

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