Strain identifier
BacDive ID: 157230
Type strain: 
Species: Bifidobacterium imperatoris
Strain history: LMG 30297 <-- M. Ventura; Dept. of Chem., Univ. of Parma, Italy; Tam1G.
NCBI tax ID(s): 2020965 (species)
version 8.1 (current version)
General
@ref: 63770
BacDive-ID: 157230
keywords: genome sequence, Bacteria, anaerobe, mesophilic
description: Bifidobacterium imperatoris LMG 30297 is an anaerobe, mesophilic bacterium that was isolated from Faeces,Emperor Tamarin.
NCBI tax id
- NCBI tax id: 2020965
- Matching level: species
strain history
- @ref: 67770
- history: LMG 30297 <-- M. Ventura; Dept. of Chem., Univ. of Parma, Italy; Tam1G.
doi: 10.13145/bacdive157230.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Bifidobacteriales
- family: Bifidobacteriaceae
- genus: Bifidobacterium
- species: Bifidobacterium imperatoris
- full scientific name: Bifidobacterium imperatoris Lugli et al. 2018
@ref: 63770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Bifidobacteriales
family: Bifidobacteriaceae
genus: Bifidobacterium
species: Bifidobacterium imperatoris
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 91.439 | |
| 69480 | 100 | positive |
colony morphology
- @ref: 63770
- incubation period: 2 days
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 63770 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 63770 | anaerobe | |
| 69480 | anaerobe | 99.427 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.966 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | sampling date | geographic location | country | origin.country | continent | host species |
|---|---|---|---|---|---|---|---|
| 63770 | Faeces,Emperor Tamarin | 2014-09-16 | Emilia Romagna,Parma | Italy | ITA | Europe | |
| 67770 | Stool sample of an emperor tamarin (Saguinus imperator) | Italy | ITA | Europe | Saguinus imperator |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Primates |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bifidobacterium imperatoris JCM 32708 | GCA_017357045 | chromosome | ncbi | 2020965 |
| 66792 | Bifidobacterium imperatoris strain JCM 32708 | 2020965.6 | complete | patric | 2020965 |
| 67770 | Bifidobacterium imperatoris Tam1G | GCA_002860405 | contig | ncbi | 2020965 |
GC content
- @ref: 67770
- GC-content: 56.13
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 94.036 | no |
| gram-positive | yes | 94.155 | no |
| anaerobic | yes | 97.991 | yes |
| aerobic | no | 96.151 | yes |
| halophile | no | 83.245 | no |
| spore-forming | no | 96.602 | no |
| glucose-util | yes | 86.942 | no |
| flagellated | no | 96.438 | no |
| thermophile | no | 93.846 | no |
| glucose-ferment | yes | 85.302 | no |
External links
@ref: 63770
culture collection no.: LMG 30297, CCUG 70961, JCM 32708
straininfo link
- @ref: 110329
- straininfo: 411730
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 29395537 | Phylogenetic classification of six novel species belonging to the genus Bifidobacterium comprising Bifidobacterium anseris sp. nov., Bifidobacterium criceti sp. nov., Bifidobacterium imperatoris sp. nov., Bifidobacterium italicum sp. nov., Bifidobacterium margollesii sp. nov. and Bifidobacterium parmae sp. nov. | Lugli GA, Mangifesta M, Duranti S, Anzalone R, Milani C, Mancabelli L, Alessandri G, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M | Syst Appl Microbiol | 10.1016/j.syapm.2018.01.002 | 2018 | Animals, Bacterial Typing Techniques, Base Sequence, Bifidobacterium/*classification/genetics, Callithrix/microbiology, Cricetinae/microbiology, DNA, Bacterial/genetics, Fatty Acids/analysis, Feces/*microbiology, Geese/microbiology, High-Throughput Nucleotide Sequencing, Italy, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rabbits/microbiology, Saguinus/microbiology, Sequence Analysis, DNA | Transcriptome |
| Phylogeny | 30789326 | Characterization of the phylogenetic diversity of five novel species belonging to the genus Bifidobacterium: Bifidobacterium castoris sp. nov., Bifidobacterium callimiconis sp. nov., Bifidobacterium goeldii sp. nov., Bifidobacterium samirii sp. nov. and Bifidobacterium dolichotidis sp. nov. | Duranti S, Lugli GA, Napoli S, Anzalone R, Milani C, Mancabelli L, Alessandri G, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003306 | 2019 | Animals, Bacterial Typing Techniques, Base Composition, Bifidobacterium/*classification, Callithrix/*microbiology, DNA, Bacterial/genetics, Feces/microbiology, Genes, Bacterial, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rodentia/*microbiology, Saimiri/*microbiology, Sequence Analysis, DNA | Transcriptome |
| Phylogeny | 33226935 | Five novel bifidobacterial species isolated from faeces of primates in two Czech zoos: Bifidobacterium erythrocebi sp. nov., Bifidobacterium moraviense sp. nov., Bifidobacterium oedipodis sp. nov., Bifidobacterium olomucense sp. nov. and Bifidobacterium panos sp. nov. | Neuzil-Bunesova V, Lugli GA, Modrackova N, Vlkova E, Bolechova P, Burtscher J, Longhi G, Mancabelli L, Killer J, Domig K, Ventura M | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004573 | 2020 | Animals, Animals, Zoo/microbiology, Bacterial Typing Techniques, Base Composition, Bifidobacterium/*classification/isolation & purification, Czech Republic, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/*microbiology, Nucleic Acid Hybridization, *Phylogeny, Primates/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 63770 | Curators of the CCUG | https://www.ccug.se/strain?id=70961 | Culture Collection University of Gothenburg (CCUG) (CCUG 70961) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 110329 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID411730.1 |