Name: Salisediminibacterium halotolerans halo-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1571

Type strain:

Species: Salisediminibacterium halotolerans

Strain Designation: halo-2

Culture col. no.: DSM 26530, CGMCC 1.7654, NBRC 104935

Strain history: <- NBRC; NBRC 104935

NCBI tax ID(s): 517425 (species)

SI-ID 407668

DSM 26530

Section

Salisediminibacterium halotolerans halo-2 is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from soda lake sediment.

Gram-positive
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Salisediminibacterium*
	Species	**Salisediminibacterium halotolerans**
	Full Scientific Name (LPSN)	Salisediminibacterium halotolerans Jiang et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30366]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #30366]	Cell length	3.5 µm

[Ref.: #30366]	Cell width	0.65 µm

[Ref.: #30366]	Cell shape	rod-shaped

[Ref.: #30366]	Motility	no
[Ref.: #69480]	Motility	yes Confidence in %92.838

[Ref.: #30366]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18252]

Culture medium

HALOPIGER MEDIUM (SG) (DSMZ Medium 1520)

[Ref.: #18252]

Culture medium growth

[Ref.: #18252]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18252]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #18252]	growth	37 °C
[Ref.: #30366]	growth	18-50 °C
[Ref.: #30366]	optimum	37 °C

[Ref.: #18252]	Temperature range	mesophilic
[Ref.: #30366]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30366]			optimum	8
[Ref.: #30366]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30366]

Oxygen tolerance

facultative anaerobe

[Ref.: #30366]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %98

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30366]		NaCl		growth	3-30	%
[Ref.: #30366]		NaCl		optimum	9	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30366]	cellobiose ChEBI	+	carbon source
[Ref.: #30366]	mannitol ChEBI	+	carbon source
[Ref.: #30366]	trehalose ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #30366]		hydrogen sulfide ChEBI	yes

	Enzymes	Enzyme	Enzyme activity
[Ref.: #30366]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18252]	Sample type/isolated from	soda lake sediment
[Ref.: #18252]	Geographic location (country and/or sea, region)	Inner-Mongolia
[Ref.: #18252]	Country	China
[Ref.: #18252]	Country ISO 3 Code	CHN
[Ref.: #18252]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment
#Condition	#Alkaline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU581836 (>99% sequence identity) for Salisediminibacterium from Microbeatlas

Aquatic Samples	48
Soil Samples	14
Animal Samples	4
Plant Samples	1
Total Samples	67

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18252]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18252]	Salisediminibacterium halotolerans strain halo-2 16S ribosomal RNA gene, partial sequence	EU581836	1443	ENA	517425 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Salisediminibacterium halotolerans DSM 26530	2786546144	draft	JGI IMG/M	517425 tax ID	*
[Ref.: #66792]	Salisediminibacterium halotolerans CGMCC 1.7654	GCA_007993825	scaffold	GenBank	517425 tax ID	*
[Ref.: #66792]	Salisediminibacterium halotolerans NBRC 104935	GCA_007988985	contig	GenBank	517425 tax ID	*
[Ref.: #66792]	Salisediminibacterium halotolerans strain CGMCC 1.7654	517425.5	wgs	PATRIC	517425 tax ID	*
[Ref.: #66792]	Salisediminibacterium halotolerans strain DSM 26530	517425.3	wgs	PATRIC	517425 tax ID	*
[Ref.: #66792]	Salisediminibacterium halotolerans strain NBRC 104935	517425.4	wgs	PATRIC	517425 tax ID	*

[Ref.: #18252]

GC-content

48.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Salisediminibacterium halotolerans DSM 26530 NCBI: GCA_003814815.1
[Ref.: #69481]	spore-forming	no	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Salisediminibacterium halotolerans DSM 26530 NCBI: GCA_003814815.1
[Ref.: #69480]	motile	yes	73.036	yes
[Ref.: #69480]	flagellated	no	58.133	yes
[Ref.: #69480]	gram-positive	yes	88.549	yes
[Ref.: #69480]	anaerobic	no	94.826	yes
[Ref.: #69480]	aerobic	yes	54.681	no
[Ref.: #69480]	halophile	yes	92.608	yes
[Ref.: #69480]	spore-forming	yes	63.558	no
[Ref.: #69480]	thermophile	no	95.136	yes
[Ref.: #69480]	glucose-util	yes	89.283	no
[Ref.: #69480]	glucose-ferment	no	81.068	no

Availability in culture collections External links

[Ref.: #18252]

Culture collection no.

DSM 26530, CGMCC 1.7654, NBRC 104935

[Ref.: #71216]

SI-ID 407668

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salisediminibacterium haloalkalitolerans sp. nov., isolated from Lonar soda lake, India, and a proposal for reclassification of Bacillus locisalis as Salisediminibacterium locisalis comb. nov., and the emended description of the genus Salisediminibacterium and of the species Salisediminibacterium halotolerans.	Sultanpuram VR, Mothe T, Mohammed F	Arch Microbiol	10.1007/s00203-015-1081-8	2015	*
Phylogeny	Salisediminibacterium halotolerans gen. nov., sp. nov., a halophilic bacterium from soda lake sediment.	Jiang F, Cao SJ, Li ZH, Fan H, Li HF, Liu WJ, Yuan HL	Int J Syst Evol Microbiol	10.1099/ijs.0.034488-0	2011	*

References

#18252

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26530

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30366

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26706 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71216

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407668.1 )

#26706

IJSEM 2127 2012 ( DOI 10.1099/ijs.0.034488-0 , PubMed 22039006 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Salisediminibacterium halotolerans in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Salisediminibacterium halotolerans DSM 26530

Salisediminibacterium halotolerans DSM 26530

Change proposal

Change proposal