Name: Arcobacter porcinus CCUG 56899
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 155204

Type strain:

Species: Arcobacter porcinus

Culture col. no.: CCUG 56899, LMG 24487

NCBI tax ID(s): 1935204 (species)

Special Collections

CCUG

Section

Arcobacter porcinus CCUG 56899 is a microaerophile, Gram-negative bacterium that was isolated from Porcine.

Gram-negative
microaerophile
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Epsilonproteobacteria*
	Order	*Campylobacterales*
	Family	*Arcobacteraceae*
	Genus	*Arcobacter*
	Species	"Arcobacter porcinus"
	Full Scientific Name (LPSN)	Arcobacter porcinus Figueras et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %96.31

[Ref.: #61123]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #61123]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #61123]

Oxygen tolerance

microaerophile

[Ref.: #69480]	Ability of spore formation	no Confidence in %94.591
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68373]	acetate ChEBI	+	assimilation	* from API CAM
[Ref.: #68373]	citrate ChEBI	-	assimilation	* from API CAM
[Ref.: #68373]	D-glucose ChEBI	-	assimilation	* from API CAM
[Ref.: #68373]	hippurate ChEBI	-	hydrolysis	* from API CAM
[Ref.: #68373]	malate ChEBI	-	assimilation	* from API CAM
[Ref.: #68373]	nitrate ChEBI	+	reduction	* from API CAM
[Ref.: #68373]	propionate ChEBI	+	assimilation	* from API CAM
[Ref.: #68373]	succinate ChEBI	+	assimilation	* from API CAM
[Ref.: #68373]	triphenyltetrazolium chloride ChEBI	+	reduction	* from API CAM
[Ref.: #68373]	urea ChEBI	-	hydrolysis	* from API CAM

	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #68373]	cefazolin ChEBI	yes	224	µg	* from API CAM
[Ref.: #68373]	erythromycin ChEBI	yes	14	µg	* from API CAM
[Ref.: #68373]	nalidixic acid ChEBI	yes	84	µg	* from API CAM

	Metabolite production	Metabolite	Production
[Ref.: #68373]		hydrogen sulfide ChEBI	no	* from API CAM

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68373]	alkaline phosphatase	+	3.1.3.1	* from API CAM
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68373]	catalase	+	1.11.1.6	* from API CAM
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68373]	esterase	+		* from API CAM
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68373]	gamma-glutamyltransferase	-	2.3.2.2	* from API CAM
[Ref.: #68373]	L-arginine arylamidase	-		* from API CAM
[Ref.: #68373]	L-aspartate arylamidase	-	3.4.11.21	* from API CAM
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68373]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API CAM
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68373]	urease	-	3.5.1.5	* from API CAM
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #61123]

Fatty acid	Percentage	ECL
C16:0	31	16
C18:1 ω7c /12t/9t	21.9	17.824
C16:1 ω7c	19.9	15.819
C16:1 ω7c/C15:0 ISO 2OH	8.5	15.85
C14:0 3OH/C16:1 ISO I	7.4	15.485
C12:0	7.2	12
C18:0	1.7	18
unknown 14.503	0.9	14.503
C18:2 ω6,9c/C18:0 ANTE	0.8	17.724
unknown 15.273	0.7	15.273

API® CAM:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Reduction of nitrateNIT	EsteraseEST	Hippuric acidHIP	gamma-Glutamyl transferaseGGT	Reduction of Triphenyl tetrazolium chlorideTTC	Pyrrolidonyl arylamidasePYRA	L-arginine arylamidaseArgA	L-aspartic acid arylamidaseAspA	Alkaline phosphatasePAL	H2S productionH2S	Assimilation of D-glucoseGLU	Assimilation of succinateSUT	Growth inhibitionNAL	Growth inhibitionCFZ	Assimilation of acetateACE	Assimilation of propionic acidPROP	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Erythromycin resistance (+) sensitivity (-)ERO	CatalaseCAT
[Ref.: #61123]	1772	-	+	+	-	-	+	-	-	-	+	-	-	+	-	-	+	+	-	-	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #61123]	1471	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #61123]	Sample type/isolated from	Porcine
[Ref.: #61123]	Sampling date	1997
[Ref.: #61123]	Country	Denmark
[Ref.: #61123]	Country ISO 3 Code	DNK
[Ref.: #61123]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host

#Mammals

#Suidae (Pig,Swine)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Arcobacter porcinus CCUG 56899	GCA_004299785	complete	GenBank ENA	1935204 tax ID	*
[Ref.: #66792]	Arcobacter thereius strain LMG24487	544718.48	wgs	PATRIC	544718 tax ID	*
[Ref.: #66792]	[Arcobacter] porcinus strain CCUG 56899	1935204.7	complete	PATRIC	1935204 tax ID	*
[Ref.: #66792]	[Arcobacter] porcinus CCUG 56899	2836935145	complete	JGI IMG/M	1935204 tax ID	*
[Ref.: #66792]	Arcobacter porcinus LMG 24487	GCA_024584075	contig	GenBank ENA	1935204 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: [Arcobacter] porcinus CCUG 56899 NCBI: GCA_004299785.2
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: [Arcobacter] porcinus CCUG 56899 NCBI: GCA_004299785.2
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.31	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	72.808	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	75.373	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	94.591	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	89.447	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	75.787	no

Availability in culture collections External links

[Ref.: #61123]

Culture collection no.

CCUG 56899, LMG 24487

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	'Arcobacter porcinus' sp. nov., a novel Arcobacter species uncovered by Arcobacter thereius.	Figueras MJ, Perez-Cataluna A, Salas-Masso N, Levican A, Collado L	New Microbes New Infect	10.1016/j.nmni.2016.11.014	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#61123 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56899

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68373

Automatically annotated from API CAM .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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[Arcobacter] porcinus CCUG 56899

[Arcobacter] porcinus CCUG 56899

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