Strain identifier

BacDive ID: 155204

Type strain: Yes

Species: Arcobacter porcinus

NCBI tax ID(s): 1935204 (species)

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General

@ref: 61123

BacDive-ID: 155204

keywords: genome sequence, Bacteria, microaerophile, mesophilic, Gram-negative

description: Arcobacter porcinus CCUG 56899 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from Porcine.

NCBI tax id

  • NCBI tax id: 1935204
  • Matching level: species

doi: 10.13145/bacdive155204.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Arcobacteraceae
  • genus: Arcobacter
  • species: Arcobacter porcinus
  • full scientific name: Arcobacter porcinus Figueras et al. 2017

@ref: 61123

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Arcobacteraceae

genus: Arcobacter

species: Arcobacter porcinus

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.999

colony morphology

  • @ref: 61123
  • incubation period: 1-2 days

Culture and growth conditions

culture temp

  • @ref: 61123
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 61123
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69480no99.983
69481no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837316199urea-hydrolysis
6837317632nitrate+reduction
68373606565hippurate-hydrolysis
6837378019triphenyltetrazolium chloride+reduction
6837317634D-glucose-assimilation
6837330031succinate+assimilation
6837330089acetate+assimilation
6837317272propionate+assimilation
6837325115malate-assimilation
6837316947citrate-assimilation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.
6837348923erythromycinyesyes14 µg
68373474053cefazolinyesyes224 µg
68373100147nalidixic acidyesyes84 µg

metabolite production

  • @ref: 68373
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: no

enzymes

@refvalueactivityec
68373catalase+1.11.1.6
68373alkaline phosphatase+3.1.3.1
68373L-aspartate arylamidase-3.4.11.21
68373L-arginine arylamidase-
68373pyrrolidonyl arylamidase-3.4.19.3
68373gamma-glutamyltransferase-2.3.2.2
68373esterase+
68373urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    61123C12:07.212
    61123C16:03116
    61123C18:01.718
    61123C14:0 3OH/C16:1 ISO I7.415.485
    61123C16:1 ω7c19.915.819
    61123C16:1 ω7c/C15:0 ISO 2OH8.515.85
    61123C18:1 ω7c /12t/9t21.917.824
    61123C18:2 ω6,9c/C18:0 ANTE0.817.724
    61123unknown 14.5030.914.503
    61123unknown 15.2730.715.273
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
61123-----------+--------

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
61123-++--+---+--+--++---+

Isolation, sampling and environmental information

isolation

  • @ref: 61123
  • sample type: Porcine
  • sampling date: 1997
  • country: Denmark
  • origin.country: DNK
  • continent: Europe

isolation source categories

  • Cat1: #Host
  • Cat2: #Mammals
  • Cat3: #Suidae (Pig,Swine)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Arcobacter porcinus CCUG 56899GCA_004299785completencbi1935204
66792Arcobacter thereius strain LMG24487544718.48wgspatric544718
66792[Arcobacter] porcinus strain CCUG 568991935204.7completepatric1935204
66792[Arcobacter] porcinus CCUG 568992836935145completeimg1935204
66792Arcobacter porcinus LMG 24487GCA_024584075contigncbi1935204

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes88.873no
motileyes88.873no
flagellatedyes65.059no
flagellatedyes65.059no
gram-positiveno98.51no
gram-positiveno98.51no
anaerobicno81.662no
anaerobicno81.662no
aerobicno93.986yes
aerobicno93.986yes
halophileno92.004no
halophileno92.004no
spore-formingno95.282no
spore-formingno95.282no
glucose-utilno89.148no
glucose-utilno89.148no
thermophileno97.532yes
thermophileno97.532yes
glucose-fermentno92.351no
glucose-fermentno92.351no

External links

@ref: 61123

culture collection no.: CCUG 56899, LMG 24487

literature

  • topic: Phylogeny
  • Pubmed-ID: 28070334
  • title: 'Arcobacter porcinus' sp. nov., a novel Arcobacter species uncovered by Arcobacter thereius.
  • authors: Figueras MJ, Perez-Cataluna A, Salas-Masso N, Levican A, Collado L
  • journal: New Microbes New Infect
  • DOI: 10.1016/j.nmni.2016.11.014
  • year: 2016

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
61123Curators of the CCUGhttps://www.ccug.se/strain?id=56899Culture Collection University of Gothenburg (CCUG) (CCUG 56899)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68373Automatically annotated from API CAM
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1