Streptomyces puniceus (DSM 40083, ATCC 19801, CBS 308.55)

Name: Streptomyces puniceus (DSM 40083, ATCC 19801, CBS 308.55)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15493

Type strain

Strain Designation FD3568, PF 1314-5

Culture col. no. DSM 40083 ATCC 19801 CBS 308.55 CBS 553.68 IFO 12811 11 more

NCBI tax ID(s) 67351

Special Collections DSMZ JCM Wink compendium

History DSMZ <- E.B. Shirling, ISP <- J. Routien, Chas. Pfizer & Co., PF 1314-5 JCM <-- KCC S-0406 <-- IFO 12811 <-- SAJ <-- ISP 5083 <-- Chas. Pfizer & Co.; 1314-5.

Links

Streptomyces puniceus FD3568 is a bacterium that produces antibiotic compounds.

antibiotic compound production genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 92657

ATCC 19801,IFO 12811,DSM 40083,JCM 4406,CCRC 12097,NRRL B-2895,VKM Ac-579,NRRL B-2423,CBS 553.68,CBS 308.55,NBRC 12811,BCRC 12097,CGMCC 4.1750

@ref 20215

Last LPSN update 2026-05-29 08:28:33

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces puniceus

Full scientific name Streptomyces puniceus Patelski 1951 (Approved Lists 1980)

BacDive ID	Other strains from **Streptomyces puniceus** (8)	Type strain
15492	S. puniceus DSM 40058, ATCC 11896, ATCC 19734, ATCC 3312, ... (type strain)
15494	S. puniceus H 37, DSM 40664
15495	S. puniceus BJ-611, DSM 40801
15496	S. puniceus MS 1484, PD A 5014a, DSM 40938, IFO 15405, ...
15497	S. puniceus 51R3639, DSM 41106, ATCC 15436, IMRU 3593
127186	S. puniceus ST003936,
159108	S. puniceus Sandoz 29516, DSM 40969
165438	S. puniceus JCM 6910

Morphology

Cell morphology

@ref	Confidence	Gram stain
125439	95.074
125439	99.103	positive
125438	92.361	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9296	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9296	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)		Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
9296	positive	growth	28
18527	positive	optimum	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	92.994
125439	obligate aerobe	98.948

Spore formation

@ref	Spore formation	Confidence
125439		95.688
125438		92.693

Compound production

@ref	Compound
9296	viomycin A
9296	viomycin B
9296	viomycin C
9296	viomycin A, B, C

Halophily

@ref	Salt	Growth	Tested relation	Concentration
18527	NaCl	positive	maximum	5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
18527	22599 ChEBI	arabinose	-
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
18527	62968 ChEBI	cellulose	-
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
18527	28757 ChEBI	fructose	-
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
18527	17234 ChEBI	glucose	+
68368	25094 ChEBI	lysine	+	degradation	from API 20E
18527	29864 ChEBI	mannitol	+
18527	17268 ChEBI	myo-inositol	-
68368	18257 ChEBI	ornithine	+	degradation	from API 20E
18527	16634 ChEBI	raffinose	-
18527	26546 ChEBI	rhamnose	-
18527	17992 ChEBI	sucrose	-
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E
18527	18222 ChEBI	xylose	-

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E
67770	15782 ChEBI	viomycin

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68368	gelatinase	+		from API 20E
68368	lysine decarboxylase	+	4.1.1.18	from API 20E
68368	ornithine decarboxylase	+	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	+	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
18527	-	+	+	+	+	-	+	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Taxonmaps

69479

Global distribution of 16S sequence AB184163 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	286
Soil Samples	2441
Animal Samples	1009
Plant Samples	294
Total Samples	4030

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9296	1	Risk group (German classification) According to TRBA 466
18527	1	German classification According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1690626v1 assembly for Streptomyces californicus FDAARGOS_1210	complete	GCA_016906265	67351.11		67351	98.61
67770	ASM71919v1 assembly for Streptomyces californicus NRRL B-2895	contig	GCA_000719195	67351.3	2767802041	67351	63.2
67770	ASM71869v1 assembly for Streptomyces californicus NRRL ISP-5083	contig	GCA_000718695	67351.4	2767802084	67351	63.06

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces californicus strain DSM 40083 16S ribosomal RNA gene, partial sequence	GU383219	779	67351
20218	Streptomyces puniceus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4406	D44121	120	67351
20218	Streptomyces puniceus gene for 16S rRNA, partial sequence, strain: NBRC 12811	AB184163	1477	67351
20218	Streptomyces puniceus gene for 16S ribosomal RNA, partial sequence, strain: NBRC 12811	AB915612	944	67351
20218	Streptomyces puniceus gene for 16S ribosomal RNA, partial sequence, isolate: R1-2A/B102	AB922839	1447	67351
20218	Streptomyces puniceus strain NRRL B-2895T 16S ribosomal RNA gene, partial sequence	DQ442542	1500	67351
124043	Streptomyces puniceus strain NBRC 12811 (T) 16S ribosomal RNA gene, partial sequence.	MK424311	1447	67351

GC content

@ref	GC-content (mol%)	Method
67770	71	fluorimetric

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1690626v1 assembly for Streptomyces californicus FDAARGOS_1210
NCBI: GCA_016906265

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.95	no
125439	motility	BacteriaNetⓘ	no	95.07	no
125439	gram_stain	BacteriaNetⓘ	positive	99.10	no
125439	spore_formation	BacteriaNetⓘ	yes	95.69	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces californicus strain FDAARGOS_1210 strain Not applicable
PATRIC: 67351.11

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.36	no
125438	anaerobic	anaerobicⓘ	no	97.90	no
125438	spore-forming	spore-formingⓘ	yes	92.69	no
125438	aerobic	aerobicⓘ	yes	92.99	no
125438	thermophilic	thermophileⓘ	no	95.50	no
125438	flagellated	motile2+ⓘ	no	88.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Transformation of low molecular compounds and soil humic acid by two domain laccase of Streptomyces puniceus in the presence of ferulic and caffeic acids.	Trubitsina LI, Lisov AV, Belova OV, Trubitsin IV, Demin VV, Konstantinov AI, Zavarzina AG, Leontievsky AA.	PLoS One	10.1371/journal.pone.0239005	2020
	Apis andreniformis associated Actinomycetes show antimicrobial activity against black rot pathogen (Xanthomonas campestris pv. campestris).	Promnuan Y, Promsai S, Pathom-Aree W, Meelai S	PeerJ	10.7717/peerj.12097	2021
Phylogeny	Streptomyces sundarbansensis sp. nov., an actinomycete that produces 2-allyloxyphenol.	Arumugam M, Mitra A, Pramanik A, Saha M, Gachhui R, Mukherjee J	Int J Syst Evol Microbiol	10.1099/ijs.0.028258-0	2010

References

#9296	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40083
#18527	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces puniceus (DSM 40083, ATCC 19801, CBS 308.55)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016906265

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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