Name: Streptomyces puniceus FD3568
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 15493

Type strain:

Species: Streptomyces puniceus

Strain Designation: FD3568, PF 1314-5

Culture col. no.: DSM 40083, ATCC 19801, CBS 308.55, CBS 553.68, IFO 12811, ISP 5083, JCM 4406, NBRC 12811, NRRL B-2895, RIA 1080, BCRC 12097, CGMCC 4.1750, NRRL ISP-5083, VKM Ac-579

Strain history: KCC S-0406 <-- IFO 12811 <-- SAJ <-- ISP 5083 <-- Chas. Pfizer & Co.; 1314-5.

NCBI tax ID(s): 67351 (species)

SI-ID 92657

ATCC 19801, IFO 12811, DSM 40083, JCM 4406, CCRC 12097, NRRL B-2895, VKM Ac-579, NRRL B-2423, CBS 553.68, CBS 308.55, NBRC 12811, BCRC 12097, CGMCC 4.1750

Special Collections

Other strains from Streptomyces puniceus

Section

Streptomyces puniceus FD3568 is a spore-forming, Gram-positive bacterium that produces antibiotic compounds.

antibiotic compound production
Gram-positive
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces puniceus**
	Full Scientific Name (LPSN)	Streptomyces puniceus Patelski 1951 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %92.361

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9296]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9296]

Culture medium growth

[Ref.: #9296]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9296]

Culture medium composition

expand / minimize

[Ref.: #9296]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #9296]

Culture medium growth

[Ref.: #9296]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9296]	growth	28 °C
[Ref.: #18527]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %92.994

[Ref.: #69480]	Ability of spore formation	yes Confidence in %92.693
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #9296]	Name of produced compound	viomycin A
[Ref.: #9296]	Name of produced compound	viomycin B
[Ref.: #9296]	Name of produced compound	viomycin C
[Ref.: #9296]	Name of produced compound	viomycin A, B, C

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18527]		NaCl		maximum	5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18527]	arabinose ChEBI	-
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18527]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #18527]	fructose ChEBI	-
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18527]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #18527]	mannitol ChEBI	+
[Ref.: #18527]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #18527]	raffinose ChEBI	-
[Ref.: #18527]	rhamnose ChEBI	-
[Ref.: #18527]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18527]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	viomycin ChEBI	yes
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18527]	87	-	+	+	+	+	-	+	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence AB184163 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	286
Soil Samples	2441
Animal Samples	1009
Plant Samples	294
Total Samples	4030

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18527]	Biosafety level	1	German classification
[Ref.: #9296]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces californicus strain DSM 40083 16S ribosomal RNA gene, partial sequence	GU383219	779	GenBank ENA	67351 tax ID	*
[Ref.: #20218]	Streptomyces puniceus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4406	D44121	120	GenBank ENA	67351 tax ID	*
[Ref.: #20218]	Streptomyces puniceus gene for 16S rRNA, partial sequence, strain: NBRC 12811	AB184163	1477	GenBank ENA	67351 tax ID	*
[Ref.: #20218]	Streptomyces puniceus gene for 16S ribosomal RNA, partial sequence, strain: NBRC 12811	AB915612	944	GenBank ENA	67351 tax ID	*
[Ref.: #20218]	Streptomyces puniceus gene for 16S ribosomal RNA, partial sequence, isolate: R1-2A/B102	AB922839	1447	GenBank ENA	67351 tax ID	*
[Ref.: #20218]	Streptomyces puniceus strain NRRL B-2895T 16S ribosomal RNA gene, partial sequence	DQ442542	1500	GenBank ENA	67351 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces californicus NRRL ISP-5083	GCA_000718695	contig	GenBank ENA	67351 tax ID
[Ref.: #67770]	Streptomyces californicus NRRL B-2895	GCA_000719195	contig	GenBank ENA	67351 tax ID
[Ref.: #66792]	Streptomyces californicus strain FDAARGOS_1210	67351.11	complete	PATRIC	67351 tax ID	*

[Ref.: #67770]

GC-content

71 mol%

fluorimetric

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces californicus strain FDAARGOS_1210 strain Not applicable PATRIC: 67351.11
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces californicus strain FDAARGOS_1210 strain Not applicable PATRIC: 67351.11
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	92.361	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.896	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	92.693	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	92.994	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.5	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88.5	no

Availability in culture collections External links

[Ref.: #9296]

Culture collection no.

DSM 40083, ATCC 19801, CBS 308.55, CBS 553.68, IFO 12811, ISP 5083, JCM 4406, NBRC 12811, NRRL B-2895, RIA 1080, BCRC 12097, CGMCC 4.1750, NRRL ISP-5083, VKM Ac-579

[Ref.: #84580]

SI-ID 92657

Literature:

	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces sundarbansensis sp. nov., an actinomycete that produces 2-allyloxyphenol.	Arumugam M, Mitra A, Pramanik A, Saha M, Gachhui R, Mukherjee J	Int J Syst Evol Microbiol	10.1099/ijs.0.028258-0	2010	*
	Apis andreniformis associated Actinomycetes show antimicrobial activity against black rot pathogen (Xanthomonas campestris pv. campestris).	Promnuan Y, Promsai S, Pathom-Aree W, Meelai S	PeerJ	10.7717/peerj.12097	2021	*

References

#9296

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40083

#18527

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84580

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92657.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces californicus strain FDAARGOS_1210 strain Not applicable

Streptomyces californicus strain FDAARGOS_1210 strain Not applicable

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