Name: Streptomyces californicus MS 1484
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15496

Type strain:

Species: Streptomyces californicus

Strain Designation: MS 1484, PD A 5014a

Culture col. no.: DSM 40938, IFO 15405, ISP 5618, JCM 5068, KCC S-1068, NBRC 15405, NCIB 9345, NCIMB 12830, NRRL 2423, PD 04833, CGMCC 4.1972, MTCC 2534, NBIMCC 3334, NCIMB 9345

Strain history: KCC S-1068 <-- MS 1484 <-- NRRL 2423 <-- Parke, Davis & Co.; PD 04833.

NCBI tax ID(s): 67351 (species)

SI-ID 386981

DSM 40938, NCIB 9345, JCM 5068, IFO 15405, NCIMB 12830, NCIMB 9345, NBRC 15405, NBIMCC 3334, NCIM 2626, NRRL 2423, CGMCC 4.1972, AS 4.1972

Section

Streptomyces californicus MS 1484 is a mesophilic bacterium that builds an aerial mycelium and produces antibiotic compounds.

antibiotic compound production
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces californicus**
	Full Scientific Name (LPSN)	Streptomyces californicus (Waksman and Curtis 1916) Waksman and Henrici 1948 (Approved Lists 1980)

	Synonym	"Actinomyces* californicus"*
	Synonym	Streptomyces floridae

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %92.412

[Ref.: #18682]	Colony color	Red brown (8012)
[Ref.: #18682]	Incubation period	10-14 days
[Ref.: #18682]	Cultivation medium used	ISP 2

[Ref.: #18682]	Colony color	Brown
[Ref.: #18682]	Incubation period	10-14 days
[Ref.: #18682]	Cultivation medium used	ISP 3

[Ref.: #18682]	Colony color	Violet
[Ref.: #18682]	Incubation period	10-14 days
[Ref.: #18682]	Cultivation medium used	ISP 4

[Ref.: #18682]	Colony color	Red
[Ref.: #18682]	Incubation period	10-14 days
[Ref.: #18682]	Cultivation medium used	ISP 5

[Ref.: #18682]	Colony color	Brown
[Ref.: #18682]	Incubation period	10-14 days
[Ref.: #18682]	Cultivation medium used	ISP 6

[Ref.: #18682]	Colony color	Violet
[Ref.: #18682]	Incubation period	10-14 days
[Ref.: #18682]	Cultivation medium used	ISP 7

[Ref.: #18682]	Multicellular complex forming ability	yes
[Ref.: #18682]	Multicellular complex name	Aerial Mycelium
[Ref.: #18682]	Multicellular complex color	White
[Ref.: #18682]	Medium Name (multicellularity)	ISP 2

[Ref.: #18682]	Multicellular complex forming ability	yes
[Ref.: #18682]	Multicellular complex name	Aerial Mycelium
[Ref.: #18682]	Multicellular complex color	White
[Ref.: #18682]	Medium Name (multicellularity)	ISP 3

[Ref.: #18682]	Multicellular complex forming ability	yes
[Ref.: #18682]	Multicellular complex name	Aerial Mycelium
[Ref.: #18682]	Multicellular complex color	White
[Ref.: #18682]	Medium Name (multicellularity)	ISP 4

[Ref.: #18682]	Multicellular complex forming ability	yes
[Ref.: #18682]	Multicellular complex name	Aerial Mycelium
[Ref.: #18682]	Multicellular complex color	White
[Ref.: #18682]	Medium Name (multicellularity)	ISP 5

[Ref.: #18682]	Multicellular complex forming ability	no
[Ref.: #18682]	Medium Name (multicellularity)	ISP 6

[Ref.: #18682]	Multicellular complex forming ability	yes
[Ref.: #18682]	Multicellular complex name	Aerial Mycelium
[Ref.: #18682]	Multicellular complex color	White
[Ref.: #18682]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9902]	growth	28 °C
[Ref.: #18682]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9902]	Temperature range	mesophilic
[Ref.: #18682]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #18682]	Spore description	Formation of spore chains (rectiflixibilis), spore surface smooth
[Ref.: #18682]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9902]	Name of produced compound	viomycin
[Ref.: #18682]	Name of produced compound	Viomycin

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18682]		NaCl		maximum	5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18682]	arabinose ChEBI	-
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18682]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #18682]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18682]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #18682]	mannitol ChEBI	+
[Ref.: #18682]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #18682]	raffinose ChEBI	+
[Ref.: #18682]	rhamnose ChEBI	-
[Ref.: #18682]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18682]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	viomycin ChEBI	yes
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18682]	190	+	+	+	+	-	-	+	+	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9902]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	FL
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

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Global distribution of 16S sequence AY999916 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	286
Soil Samples	2441
Animal Samples	1009
Plant Samples	294
Total Samples	4030

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18682]	Biosafety level	1	German classification
[Ref.: #9902]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces floridae strain NRRL 2423 16S ribosomal RNA gene, partial sequence	AY999916	1424	ENA	68201 tax ID	*
[Ref.: #20218]	Streptomyces floridae strain DSM 40938 16S ribosomal RNA gene, partial sequence	GU383177	779	ENA	68201 tax ID	*
[Ref.: #20218]	Streptomyces floridae gene for 16S rRNA, partial sequence, strain: NBRC 15405	AB184656	1477	ENA	68201 tax ID	*
[Ref.: #20218]	Streptomyces floridae gene for 16S ribosomal RNA, partial sequence, strain: JCM 5068	D44437	120	ENA	68201 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces californicus NRRL 2423	GCA_000717665	contig	GenBank	67351 tax ID
[Ref.: #66792]	Streptomyces floridae strain NRRL 2423	68201.3	wgs	PATRIC	67351 tax ID	*
[Ref.: #66792]	Streptomyces californicus NRRL 2423	2767802092	draft	JGI IMG/M	67351 tax ID	*

[Ref.: #67770]

GC-content

72.7 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces floridae strain NRRL 2423 PATRIC: 68201.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces floridae strain NRRL 2423 PATRIC: 68201.3
[Ref.: #69480]	gram-positive	yes	92.155	no
[Ref.: #69480]	anaerobic	no	98.893	no
[Ref.: #69480]	halophile	no	92.552	no
[Ref.: #69480]	spore-forming	yes	93.648	yes
[Ref.: #69480]	glucose-util	yes	88.359	yes
[Ref.: #69480]	thermophile	no	98.69	no
[Ref.: #69480]	flagellated	no	97.804	no
[Ref.: #69480]	motile	no	94.238	no
[Ref.: #69480]	aerobic	yes	93.355	no
[Ref.: #69480]	glucose-ferment	no	84.584	no

Availability in culture collections External links

[Ref.: #9902]

Culture collection no.

DSM 40938, IFO 15405, ISP 5618, JCM 5068, KCC S-1068, NBRC 15405, NCIB 9345, NCIMB 12830, NRRL 2423, PD 04833, CGMCC 4.1972, MTCC 2534, NBIMCC 3334, NCIMB 9345

[Ref.: #84582]

SI-ID 386981

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces sundarbansensis sp. nov., an actinomycete that produces 2-allyloxyphenol.	Arumugam M, Mitra A, Pramanik A, Saha M, Gachhui R, Mukherjee J	Int J Syst Evol Microbiol	10.1099/ijs.0.028258-0	2010	*

References

#9902

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40938

#18682

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84582

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID386981.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces floridae strain NRRL 2423

Streptomyces floridae strain NRRL 2423

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