Name: Streptomyces parvus DSM 40348
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 15458

Type strain:

Species: Streptomyces parvus

Culture col. no.: DSM 40348, ATCC 12433, CBS 427.61, ETH 12647, IMRU 3686, ISP 5348, NRRL B-1455, JCM 4069, BCRC 15148, CGMCC 4.0610, HAMBI 1018, HUT 6062, IFO 14599, IFO 3388, KCTC 19057, MTCC 322, NBRC 14599, NBRC 3388, NCIMB 9608, NRRL B-1255, RIA 610, VKM Ac-725

Strain history: KCC S-0069 <-- H. Yonehara <-- MTHU <-- NRRL B-1255.

NCBI tax ID(s): 66428 (species)

SI-ID 389291

ATCC 12433, IFO 3388, IFO 14599, NRRL B-1455, DSM 40348, JCM 4069, HUT 6062, NCIMB 9608, NRRL B-1255, VKM Ac-725, CBS 427.61, NBRC 14599, NBRC 3388, AS 4.0610, HAMBI 1018, BCRC 15148, CCRC 15148, KCTC 19057, NCIB 9608, CGMCC 4.0610

Special Collections

Other strains from Streptomyces parvus

Section

Streptomyces parvus DSM 40348 is a spore-forming, Gram-positive bacterium that produces antibiotic compounds and was isolated from garden soil.

antibiotic compound production
Gram-positive
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces parvus**
	Full Scientific Name (LPSN)	Streptomyces parvus (Krainsky 1914) Waksman and Henrici 1948 (Approved Lists 1980)

Synonym

"Actinomyces parvus"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %92.016

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #9476]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %90.612

[Ref.: #69480]	Ability of spore formation	yes Confidence in %92.169
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

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Name of produced compound

actinomycin C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9476]	Sample type/isolated from	garden soil
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Garden

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ442537 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	286
Soil Samples	2441
Animal Samples	1009
Plant Samples	294
Total Samples	4030

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces parvus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4069	D43998	120	GenBank ENA	66428 tax ID	*
[Ref.: #20218]	Streptomyces parvus gene for 16S rRNA, partial sequence, strain: NBRC 14599	AB184603	1458	GenBank ENA	66428 tax ID	*
[Ref.: #20218]	Streptomyces parvus gene for 16S rRNA, partial sequence, strain: NBRC 3388	AB184756	1478	GenBank ENA	66428 tax ID	*
[Ref.: #20218]	Streptomyces parvus strain NRRL B-1455T 16S ribosomal RNA gene, partial sequence	DQ442537	1493	GenBank ENA	66428 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces parvus JCM 4069	GCA_014648875	scaffold	GenBank ENA	66428 tax ID	*
[Ref.: #66792]	Streptomyces parvus strain JCM 4069	66428.6	wgs	PATRIC	66428 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces parvus JCM 4069 NCBI: GCA_014648875.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces parvus JCM 4069 NCBI: GCA_014648875.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	92.016	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.395	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	90.612	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	92.169	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.491	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88	no

Availability in culture collections External links

[Ref.: #9476]

Culture collection no.

DSM 40348, ATCC 12433, CBS 427.61, ETH 12647, IMRU 3686, ISP 5348, NRRL B-1455, JCM 4069, BCRC 15148, CGMCC 4.0610, HAMBI 1018, HUT 6062, IFO 14599, IFO 3388, KCTC 19057, MTCC 322, NBRC 14599, NBRC 3388, NCIMB 9608, NRRL B-1255, RIA 610, VKM Ac-725

[Ref.: #84546]

SI-ID 389291

Literature:

	Title	Authors	Journal	DOI	Year
	Potential secondary metabolite from Indonesian Actinobacteria (InaCC A758) against Mycobacterium tuberculosis.	Rakhmawatie MD, Wibawa T, Lisdiyanti P, Pratiwi WR, Damayanti E, Mustofa	Iran J Basic Med Sci	10.22038/ijbms.2021.56468.12601	2021	*

References

#9476

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40348

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84546

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389291.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces parvus JCM 4069

Streptomyces parvus JCM 4069

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