Name: Lysinibacillus macroides 1741-1b
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1542

Type strain:

Species: Lysinibacillus macroides

Strain Designation: 1741-1b

Culture col. no.: DSM 54, ATCC 12905, LMG 18474, SAG 1741-1b, JCM 21742, IAM 15292, LMG 18473

Strain history: IAM 15292 <-- LMG 18474 <-- N. Logan <-- DSM 54 <-- SAG; 1741-1b <-- E. Pringsheim.

NCBI tax ID(s): 33935 (species)

SI-ID 12119

LMG 18473, ATCC 12905, DSM 54, LMG 18474, NCIM 2596, NCIB 8796, NCIM 2812, JCM 21742, IAM 15292

Special Collections

Other strains from Lysinibacillus macroides

Section

Lysinibacillus macroides 1741-1b is an aerobe, spore-forming, Gram-variable bacterium that was isolated from cow dung.

Gram-variable
motile
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Lysinibacillus*
	Species	**Lysinibacillus macroides**
	Full Scientific Name (LPSN)	Lysinibacillus macroides (ex Bennett and Canale-Parola 1965) Coorevits et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #29993]	Gram stain	variable

[Ref.: #29993]	Cell length	03-05 µm

[Ref.: #29993]	Cell width	0.9-1.1 µm

[Ref.: #29993]	Cell shape	rod-shaped

[Ref.: #29993]	Motility	yes

[Ref.: #29993]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2045]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #2045]

Culture medium growth

[Ref.: #2045]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2045]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #2045]	growth	30 °C
[Ref.: #29993]	growth	20-45 °C
[Ref.: #29993]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #29993]			optimum	8
[Ref.: #29993]			growth	07-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29993]

Oxygen tolerance

aerobe

[Ref.: #29993]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %92.664

[Ref.: #2045]

Name of produced compound

protein

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29993]		NaCl		growth	0-4	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29993]	citrate ChEBI	+	carbon source
[Ref.: #29993]	gluconate ChEBI	+	carbon source
[Ref.: #29993]	propionate ChEBI	+	carbon source
[Ref.: #29993]	raffinose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29993]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2045]	Sample type/isolated from	cow dung

[Ref.: #67770]	Sample type/isolated from	Cow dung
[Ref.: #67770]	Geographic location (country and/or sea, region)	Cambridge
[Ref.: #67770]	Country	United Kingdom
[Ref.: #67770]	Country ISO 3 Code	GBR
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ628749 (>99% sequence identity) for Lysinibacillus from Microbeatlas

Aquatic Samples	68
Soil Samples	226
Animal Samples	485
Plant Samples	25
Total Samples	804

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2045]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2045]	Bacillus macroides partial 16S rRNA gene, strain LMG 18474	AJ628749	1504	GenBank ENA	33935 tax ID
[Ref.: #124043]	Lysinibacillus macroides strain LMG 18474 16S ribosomal RNA gene, partial sequence.	ON754036	1504	GenBank ENA	33935 tax ID	*
[Ref.: #124043]	Lysinibacillus macroides strain LMG 18474 16S ribosomal RNA gene, partial sequence.	OR186663	1400	GenBank ENA	33935 tax ID	*
[Ref.: #20218]	Bacillus macroides clone Bmac2 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF478088	477	GenBank ENA	33935 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lysinibacillus macroides DSM 54	GCA_001281525	scaffold	GenBank ENA	33935 tax ID

[Ref.: #2045]	GC-content	38.2 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29993]	GC-content	38.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lysinibacillus macroides DSM 54 NCBI: GCA_001281525.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	72.327	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.933	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	81.349	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	92.664	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.346	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	84.742	no

Availability in culture collections External links

[Ref.: #2045]

Culture collection no.

DSM 54, ATCC 12905, LMG 18474, SAG 1741-1b, JCM 21742, IAM 15292, LMG 18473

[Ref.: #71187]

SI-ID 12119

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome Sequence of Type Strain Lysinibacillus macroides DSM 54T.	Liu GH, Liu B, Wang JP, Che JM, Chen QQ, Chen Z, Ge CB	Genome Announc	10.1128/genomeA.01271-15	2015	*
Phylogeny	Lysinibacillus cresolivorans sp. nov., an m-cresol-degrading bacterium isolated from coking wastewater treatment aerobic sludge.	Ren Y, Chen SY, Yao HY, Deng LJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000569	2015	*
Phylogeny	Lysinibacillus jejuensis sp. nov., isolated from swinery waste.	Kim JY, Park SH, Oh DC, Kim YJ	J Microbiol	10.1007/s12275-013-2500-7	2013	*
Phylogeny	Lysinibacillus macroides sp. nov., nom. rev.	Coorevits A, Dinsdale AE, Heyrman J, Schumann P, Van Landschoot A, Logan NA, De Vos P	Int J Syst Evol Microbiol	10.1099/ijs.0.027995-0	2011	*

References

#2045

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 54

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#29993

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26359 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#71187

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID12119.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#26359

IJSEM 1121 2012 ( DOI 10.1099/ijs.0.027995-0 , PubMed 21724959 )

* These data were automatically processed and therefore are not curated

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Lysinibacillus macroides DSM 54

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