Name: Streptomyces iakyrus DSM 40482
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15325

Type strain:

Species: Streptomyces iakyrus

Culture col. no.: DSM 40482, ATCC 15375, CBS 702.72, IFO 13401, ISP 5482, JCM 4254, JCM 4773, NBRC 13401, RIA 1362, IAUR 3923, BCRC 11930, CGMCC 4.1912, INMI 15375, NRRL B-3317, NRRL B-3634, NRRL ISP-5482, VKM Ac-201

Strain history: KCC S-0254 <-- IAUR 3119 (V. M. Q. Gonçalves de Lima 3923).

NCBI tax ID(s): 68219 (species)

SI-ID 389320

ATCC 15375, IFO 13401, JCM 4254, DSM 40482, JCM 4773, CCRC 11930, NRRL B-3317, NRRL B-3634, VKM Ac-201, CBS 702.72, NBRC 13401, BCRC 11930, CGMCC 4.1912

Other strains from Streptomyces iakyrus

S. iakyrus CS 210, DSM 41873

Section

Streptomyces iakyrus DSM 40482 is a mesophilic bacterium that was isolated from soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces iakyrus**
	Full Scientific Name (LPSN)	Streptomyces iakyrus de Querioz and Albert 1962 (Approved Lists 1980)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9575]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9575]	growth	28 °C
[Ref.: #18600]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9575]	Temperature range	mesophilic
[Ref.: #18600]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #9575]	Name of produced compound	iakirine I
[Ref.: #9575]	Name of produced compound	iakirine II
[Ref.: #9575]	Name of produced compound	iakirine III
[Ref.: #9575]	Name of produced compound	iakirine I, II, III
[Ref.: #67770]	Name of produced compound	Iaquirins I, II and III

	Metabolite	Utilization activity
[Ref.: #18600]	arabinose ChEBI	+
[Ref.: #18600]	cellulose ChEBI	+
[Ref.: #18600]	fructose ChEBI	+
[Ref.: #18600]	glucose ChEBI	+
[Ref.: #18600]	mannitol ChEBI	+
[Ref.: #18600]	myo-inositol ChEBI	+
[Ref.: #18600]	raffinose ChEBI	+
[Ref.: #18600]	rhamnose ChEBI	+
[Ref.: #18600]	sucrose ChEBI	+
[Ref.: #18600]	xylose ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18600]	243	not determinedn.d.	+	+	+	-	+	+	-	+	-	+	+	-	+	-	-	-	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9575]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Recife, Pernambuco
[Ref.: #67770]	Country	Brazil
[Ref.: #67770]	Country ISO 3 Code	BRA
[Ref.: #67770]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces iakyrus partial 16S rRNA gene, strain ISP 5482	AJ399489	1448	ENA	68219 tax ID	*
[Ref.: #20218]	Streptomyces iakyrus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4773	D44350	121	ENA	68219 tax ID	*
[Ref.: #20218]	Streptomyces iakyrus gene for 16S rRNA, partial sequence, strain: NBRC 13401	AB184877	1475	ENA	68219 tax ID	*
[Ref.: #20218]	Streptomyces iakyrus 16S ribosomal RNA gene, partial sequence	KC355421	542	ENA	68219 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces iakyrus NRRL ISP-5482	GCA_000717055	contig	GenBank	68219 tax ID

[Ref.: #67770]

GC-content

72.4 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces iakyrus NRRL ISP-5482 NCBI: GCA_000717055.1
[Ref.: #69480]	motile	no	92.543	no
[Ref.: #69480]	flagellated	no	97.16	no
[Ref.: #69480]	gram-positive	yes	85.774	no
[Ref.: #69480]	anaerobic	no	98.715	no
[Ref.: #69480]	halophile	no	90.434	no
[Ref.: #69480]	spore-forming	yes	94.472	no
[Ref.: #69480]	thermophile	no	98.866	yes
[Ref.: #69480]	glucose-util	yes	90.256	yes
[Ref.: #69480]	aerobic	yes	89.939	no
[Ref.: #69480]	glucose-ferment	no	89.593	no

Availability in culture collections External links

[Ref.: #9575]

Culture collection no.

DSM 40482, ATCC 15375, CBS 702.72, IFO 13401, ISP 5482, JCM 4254, JCM 4773, NBRC 13401, RIA 1362, IAUR 3923, BCRC 11930, CGMCC 4.1912, INMI 15375, NRRL B-3317, NRRL B-3634, NRRL ISP-5482, VKM Ac-201

[Ref.: #84418]

SI-ID 389320

References

#9575

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40482

#18600

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#84418

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389320.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces iakyrus NRRL ISP-5482

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