Strain identifier

BacDive ID: 15325

Type strain: Yes

Species: Streptomyces iakyrus

Strain history: KCC S-0254 <-- IAUR 3119 (V. M. Q. Gonçalves de Lima 3923).

NCBI tax ID(s): 68219 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 9575

BacDive-ID: 15325

DSM-Number: 40482

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Streptomyces iakyrus DSM 40482 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 68219
  • Matching level: species

strain history

@refhistory
9575<- E.B. Shirling, ISP <- ATCC <- C.A. Albert, IAUR, 3923
67770KCC S-0254 <-- IAUR 3119 (V. M. Q. Gonçalves de Lima 3923).

doi: 10.13145/bacdive15325.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces iakyrus
  • full scientific name: Streptomyces iakyrus de Querioz and Albert 1962 (Approved Lists 1980)

@ref: 9575

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces iakyrus

full scientific name: Streptomyces iakyrus de Querioz and Albert 1962

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9575GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9575ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperaturerange
18600positiveoptimum28mesophilic
9575positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

@refcompound
9575iakirine I
9575iakirine II
9575iakirine III
9575iakirine I, II, III
67770Iaquirins I, II and III

metabolite utilization

@refChebi-IDmetaboliteutilization activity
1860017234glucose+
1860022599arabinose+
1860017992sucrose+
1860018222xylose-
1860017268myo-inositol+
1860029864mannitol+
1860028757fructose+
1860026546rhamnose+
1860016634raffinose+
1860062968cellulose+

enzymes

@refvalueactivityec
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
18600+++-++-+-++-+---++-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
9575soil
67770SoilRecife, PernambucoBrazilBRAMiddle and South America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 9575
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces iakyrus partial 16S rRNA gene, strain ISP 5482AJ3994891448ena68219
20218Streptomyces iakyrus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4773D44350121ena68219
20218Streptomyces iakyrus gene for 16S rRNA, partial sequence, strain: NBRC 13401AB1848771475ena68219
20218Streptomyces iakyrus 16S ribosomal RNA gene, partial sequenceKC355421542ena68219

Genome sequences

  • @ref: 67770
  • description: Streptomyces iakyrus NRRL ISP-5482
  • accession: GCA_000717055
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 68219

GC content

  • @ref: 67770
  • GC-content: 72.4
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno92.543no
flagellatedno97.16no
gram-positiveyes85.774no
anaerobicno98.715no
halophileno90.434no
spore-formingyes94.472no
thermophileno98.866yes
glucose-utilyes90.256yes
aerobicyes89.939no
glucose-fermentno89.593no

External links

@ref: 9575

culture collection no.: DSM 40482, ATCC 15375, CBS 702.72, IFO 13401, ISP 5482, JCM 4254, JCM 4773, NBRC 13401, RIA 1362, IAUR 3923, BCRC 11930, CGMCC 4.1912, INMI 15375, NRRL B-3317, NRRL B-3634, NRRL ISP-5482, VKM Ac-201

straininfo link

  • @ref: 84418
  • straininfo: 389320

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9575Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40482)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40482
18600Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40482.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
84418Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389320.1StrainInfo: A central database for resolving microbial strain identifiers