Name: Kitasatospora herbaricolor DSM 40123
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15292

Type strain:

Species: Kitasatospora herbaricolor

Culture col. no.: DSM 40123, AS 4.1849, ATCC 23922, CBS 906.68, IFO 12876, ISP 5123, NBRC 12876, NBRC 3838, NRRL B-3299, RIA 1126, RIA 654, OEU 608, JCM 4138, BCRC 13772, CBS 424.61, CGMCC 4.1849, CGMCC 4.1887, IFO 3932, JCM 4645, NBIMCC 494, NBRC 3932, NCIMB 9837, NRRL ISP-5123, VKM Ac-793

Strain history: KCC S-0138 <-- R. Shinobu 608.

NCBI tax ID(s): 68217 (species)

SI-ID 389275

ATCC 23922, IFO 12876, DSM 40123, NRRL B-3299, JCM 4138, CCRC 13772, IFO 3932, NCIMB 9837, VKM Ac-793, JCM 4645, IFO 3838, CBS 906.68, CBS 424.61, NBRC 12876, NBRC 3932, AS 4.1849, BCRC 13772, NBRC 3838, NBIMCC 494, NCIB 9837, CGMCC 4.1849, AS 4.1887, CGMCC 4.1887

Section

Kitasatospora herbaricolor DSM 40123 is a spore-forming, mesophilic bacterium that was isolated from soil.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Kitasatospora*
	Species	**Kitasatospora herbaricolor**
	Full Scientific Name (LPSN)	Kitasatospora herbaricolor (Kawato and Shinobu 1959) Labeda et al. 2017

Synonym

Streptomyces herbaricolor

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %94.42

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9327]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9327]

Culture medium growth

[Ref.: #9327]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9327]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9327]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9327]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9327]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Nishi Park, Fukuoka City
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9327]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #9327]	Streptomyces herbaricolor gene for 16S rRNA, partial sequence, strain: NBRC 3838	AB184801	1474	ENA	68217 tax ID
[Ref.: #20218]	Streptomyces herbaricolor gene for 16S ribosomal RNA, partial sequence, strain: JCM 4138	D44014	120	ENA	68217 tax ID	*
[Ref.: #20218]	Streptomyces herbaricolor gene for 16S rRNA, partial sequence, strain: NBRC 12876	AB184212	1468	ENA	68217 tax ID	*
[Ref.: #20218]	Streptomyces herbaricolor gene for 16S rRNA, partial sequence, strain: NBRC 3932	AB184815	1451	ENA	68217 tax ID	*
[Ref.: #20218]	Streptomyces herbaricolor strain NRRL B-3299T 16S ribosomal RNA gene, partial sequence	DQ442505	1497	ENA	68217 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Kitasatospora herbaricolor JCM 4138	GCA_014648975	scaffold	GenBank	68217 tax ID	*
[Ref.: #66792]	Kitasatospora herbaricolor strain JCM 4138	68217.3	wgs	PATRIC	68217 tax ID	*
[Ref.: #66792]	Streptomyces herbaricolor DSM 40123	2926774088	draft	JGI IMG/M	68217 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Kitasatospora herbaricolor JCM 4138 NCBI: GCA_014648975.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kitasatospora herbaricolor JCM 4138 NCBI: GCA_014648975.1
[Ref.: #69480]	flagellated	no	97.669	no
[Ref.: #69480]	gram-positive	yes	90.952	no
[Ref.: #69480]	anaerobic	no	99.332	no
[Ref.: #69480]	aerobic	yes	92.829	no
[Ref.: #69480]	halophile	no	92.087	no
[Ref.: #69480]	spore-forming	yes	93.91	no
[Ref.: #69480]	thermophile	no	98.919	yes
[Ref.: #69480]	glucose-util	yes	90.055	no
[Ref.: #69480]	motile	no	93.886	no
[Ref.: #69480]	glucose-ferment	no	87.591	no

Availability in culture collections External links

[Ref.: #9327]

Culture collection no.

DSM 40123, AS 4.1849, ATCC 23922, CBS 906.68, IFO 12876, ISP 5123, NBRC 12876, NBRC 3838, NRRL B-3299, RIA 1126, RIA 654, OEU 608, JCM 4138, BCRC 13772, CBS 424.61, CGMCC 4.1849, CGMCC 4.1887, IFO 3932, JCM 4645, NBIMCC 494, NBRC 3932, NCIMB 9837, NRRL ISP-5123, VKM Ac-793

[Ref.: #84386]

SI-ID 389275

References

#9327

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40123

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84386

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389275.1 )

* These data were automatically processed and therefore are not curated

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Kitasatospora herbaricolor JCM 4138

Kitasatospora herbaricolor JCM 4138

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