Name: Streptomyces halstedii DSM 40067
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15269

Type strain:

Species: Streptomyces halstedii

Culture col. no.: DSM 40067, AS 4.1864, ATCC 19764, ATCC 3325, CBS 502.68, IFO 12777, IFO 3415, IMRU 3325, ISP 5067, KCC S-0042, KCC S-0043, KCC S-0581, NBRC 12777, NBRC 3415, NRRL B-1062, RIA 1044, JCM 4042, BCRC 13677, CBS 280.30, CCM 3181, CGMCC 4.1864, HAMBI 1000, HUT 6054, HUT 6056, HUT 6099, IFO 3416, IFO 3719, IMET 42053, JCM 4043, JCM 4581, KCTC 9028, NBRC 3416, NBRC 3719, NCIMB 9606, NRRL B-2925, RIA 88, VKM Ac-1726

Strain history: KCC S-0042 <-- T. Yamaguchi (IAM 0034) <-- ATU <-- NRRL B-1062 <-- ATCC 3325 <-- IMRU 3325.

NCBI tax ID(s): 1909 (species)

SI-ID 311064

ATCC 3325, ATCC 19764, IFO 12777, DSM 40067, IFO 3415, NRRL B-1062, JCM 4042, CCRC 13677, HUT 6056, HUT 6099, IFO 3719, IMET 42053, NCIMB 9606, NRRL B-2925, VKM Ac-1726, JCM 4043, JCM 4581, IFO3416, CCM 3181, CBS 502.68, CBS 280.30, KCTC 9028, NBRC 12777, NBRC 3415, NBRC 3719, AS 4.1864, NBRC 3416, BCRC 13677, HAMBI 1000, CDBB 600, NCIB 9606, CGMCC 4.1864, AS 4.1957, CGMCC 4.1957

Other strains from Streptomyces halstedii

S. halstedii DSM 40068, ATCC 10897, ATCC 19770, ... (type strain)
S. halstedii 14576-4, Schering 307, DSM 40854, ...
S. halstedii DI-7, DSM 41146, IMRU 3738
S. halstedii MA-317, DSM 40559, ATCC 12705, ...
S. halstedii 49982-22, Schering 345, DSM 40863, ...
S. halstedii 16B, ID 3825, DSM 41718
S. halstedii 30A, DSM 41726
S. halstedii 30C, DSM 41728
S. halstedii 34C, ID 3847, DSM 41736
S. halstedii ST028287(HKI), A83/115.5.1, i2070, ...
S. halstedii SF005564(FSU),
S. halstedii SF005569(FSU),
S. halstedii SF002226(FSU),
S. halstedii JCM 4052, CBS 423.34, CGMCC 4.0602, ...

Section

Streptomyces halstedii DSM 40067 is a mesophilic bacterium that was isolated from soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces halstedii**
	Full Scientific Name (LPSN)	Streptomyces halstedii (Waksman and Curtis 1916) Waksman and Henrici 1948 (Approved Lists 1980)

	Synonym	Streptomyces griseolus
	Synonym	"Actinomyces* griseolus"*
	Synonym	"Actinomyces* halstedii"*
	Synonym	Streptomyces graminofaciens

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9163]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9163]

Culture medium growth

[Ref.: #9163]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9163]

Culture medium composition

expand / minimize

[Ref.: #9163]

Culture medium

ISP 5 MEDIUM (DSMZ Medium 993)

[Ref.: #9163]

Culture medium growth

[Ref.: #9163]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9163]	growth	28 °C
[Ref.: #18479]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9163]	Temperature range	mesophilic
[Ref.: #18479]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18479]		NaCl		growth	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18479]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18479]	cellulose ChEBI	+
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #18479]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18479]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #18479]	mannitol ChEBI	+
[Ref.: #18479]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #18479]	raffinose ChEBI	+
[Ref.: #18479]	rhamnose ChEBI	+
[Ref.: #18479]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18479]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E, API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18479]	63	-	+	+	+	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18479]	180	not determinedn.d.	+	-	+	-	+	-	+	-	-	+	+	-	-	-	-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9163]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB184788 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	286
Soil Samples	2441
Animal Samples	1009
Plant Samples	294
Total Samples	4030

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18479]	Biosafety level	1	German classification
[Ref.: #9163]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces griseolus strain AS 4.1864 16S ribosomal RNA gene, partial sequence	AY999882	1399	ENA	1909 tax ID	*
[Ref.: #20218]	Streptomyces griseolus strain AS 4.1864 16S ribosomal RNA gene, partial sequence	FJ405906	1369	ENA	1909 tax ID	*
[Ref.: #20218]	Streptomyces griseolus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4043	D43990	120	ENA	1909 tax ID	*
[Ref.: #20218]	Streptomyces griseolus gene for 16S rRNA, partial sequence, strain: NBRC 12777	AB184136	1429	ENA	1909 tax ID	*
[Ref.: #20218]	Streptomyces griseolus gene for 16S rRNA, partial sequence, strain: NBRC 3415	AB184768	1477	ENA	1909 tax ID	*
[Ref.: #20218]	Streptomyces griseolus gene for 16S rRNA, partial sequence, strain: NBRC 3416	AB184769	1477	ENA	1909 tax ID	*
[Ref.: #20218]	Streptomyces griseolus gene for 16S rRNA, partial sequence, strain: NBRC 3719	AB184788	1477	ENA	1909 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces griseolus NRRL B-2925	GCA_000721185	contig	GenBank	1909 tax ID

[Ref.: #67770]

GC-content

72 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces griseolus NRRL B-2925 NCBI: GCA_000721185.1
[Ref.: #69480]	motile	no	93.936	no
[Ref.: #69480]	flagellated	no	97.73	no
[Ref.: #69480]	gram-positive	yes	87.88	no
[Ref.: #69480]	anaerobic	no	99.035	no
[Ref.: #69480]	aerobic	yes	93.898	no
[Ref.: #69480]	halophile	no	93.766	yes
[Ref.: #69480]	spore-forming	yes	94.519	no
[Ref.: #69480]	glucose-util	yes	87.603	yes
[Ref.: #69480]	glucose-ferment	no	87.017	no
[Ref.: #69480]	thermophile	no	98.52	yes

Availability in culture collections External links

[Ref.: #9163]

Culture collection no.

DSM 40067, AS 4.1864, ATCC 19764, ATCC 3325, CBS 502.68, IFO 12777, IFO 3415, IMRU 3325, ISP 5067, KCC S-0042, KCC S-0043, KCC S-0581, NBRC 12777, NBRC 3415, NRRL B-1062, RIA 1044, JCM 4042, BCRC 13677, CBS 280.30, CCM 3181, CGMCC 4.1864, HAMBI 1000, HUT 6054, HUT 6056, HUT 6099, IFO 3416, IFO 3719, IMET 42053, JCM 4043, JCM 4581, KCTC 9028, NBRC 3416, NBRC 3719, NCIMB 9606, NRRL B-2925, RIA 88, VKM Ac-1726

[Ref.: #84364]

SI-ID 311064

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Bacterial Biotransformation and Anticancer Activities of Betulin against A549, HepG2 and 5RP7 Cancer Cell Lines.	Kiran I, Ciftci GA, Eklioglu OA, Akkaya SGK	Anticancer Agents Med Chem	10.2174/1871520620666201029102400	2021	*
Metabolism	Screening of compactin-resistant microorganisms capable of converting compactin to pravastatin.	Chen CH, Hu HY, Cho YC, Hsu WH	Curr Microbiol	10.1007/s00284-005-0276-7	2006	*

References

#9163

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40067

#18479

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#84364

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID311064.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces griseolus NRRL B-2925

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