Achromobacter insolitus (CCUG 47056, LMG 5997)

Name: Achromobacter insolitus (CCUG 47056, LMG 5997)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 152561

Type strain

Culture col. no. CCUG 47056 LMG 5997

NCBI tax ID(s) 217204

Special Collections CCUG

Links

Achromobacter insolitus CCUG 47056 is an aerobe prokaryote that was isolated from Laboratory sink.

aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 788

LMG 5997,CCUG 47056

@ref 20215

Last LPSN update 2025-12-16 10:06:36

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Achromobacter

Species Achromobacter insolitus

Full scientific name Achromobacter insolitus Coenye et al. 2003

BacDive ID	Other strains from **Achromobacter insolitus** (13)	Type strain
322	A. insolitus DSM 23807, CCUG 47057, LMG 6003, CIP 108202, ... (type strain)
136842	A. insolitus 659.86, CIP 102662
147385	A. insolitus CCUG 33504
152562	A. insolitus CCUG 47058, LMG 6000
152563	A. insolitus CCUG 47059, LMG 5999
152564	A. insolitus CCUG 47060, LMG 6001
152565	A. insolitus CCUG 47061, LMG 6010
152692	A. insolitus CCUG 47382
154942	A. insolitus CCUG 55796
155004	A. insolitus CCUG 56040
155015	A. insolitus CCUG 56089
155038	A. insolitus CCUG 56202
156414	A. insolitus CCUG 61621

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.1
125438	negative	97.682

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
57485	positive	growth	30-42

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
57485	aerobe
125438	aerobe	91.402

Spore formation

@ref	Spore formation	Confidence
125439		97.3

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
68369	gelatinase	-		from API 20NE
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68382	trypsin	-	3.4.21.4	from API zym
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

Fatty acid profile

Metadata FA analysis

@ref

57485

Fatty acid	Percentage	ECL
C16:0	35	16
C16:1 ω7c	27.4	15.819
C17:0 CYCLO	12.7	16.888
C18:1 ω7c /12t/9t	6.6	17.824
C14:0	4.7	14
C14:0 3OH/C16:1 ISO I	3.8	15.485
C12:0 ALDE ?	2.6	10.915
C12:0 2OH	2.1	13.178
C18:0	1.7	18
C12:0	0.8	12
C17:0	0.8	17
C18:2 ω6,9c/C18:0 ANTE	0.7	17.724
C19:0 CYCLO ω8c	0.6	18.9
C15:0	0.5	15

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
57485	-	+	+	-	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
57485	+	-	-	-	-	-	-	-	+	-	-	-	-	-	+	+	+	+	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Built environment	#Water reservoir (Aquarium/pool)
#Engineered	#Laboratory	-

Isolation

57485

Sample typeLaboratory sink

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	LMG 5997 assembly for Achromobacter insolitus LMG 5997	contig	GCA_902860175	217204.15	217204	69.81

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Achromobacter insolitus partial 16S rRNA gene, strain CCUG 47056	HG423409	445		217204
124043	Achromobacter insolitus strain CCUG 47056 16S ribosomal RNA gene, partial sequence.	JQ746430	1309		217204

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Achromobacter insolitus LMG 5997
NCBI: GCA_902860175

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.30	no
125439	motility	BacteriaNetⓘ	yes	86.10	no
125439	gram_stain	BacteriaNetⓘ	negative	99.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	86.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Achromobacter insolitus strain LMG 5997
PATRIC: 217204.15

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.68	no
125438	anaerobic	anaerobicⓘ	no	98.28	yes
125438	spore-forming	spore-formingⓘ	no	89.44	no
125438	aerobic	aerobicⓘ	yes	91.40	yes
125438	thermophilic	thermophileⓘ	no	99.49	no
125438	flagellated	motile2+ⓘ	yes	84.64	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Multilocus sequence analysis of isolates of Achromobacter from patients with cystic fibrosis reveals infecting species other than Achromobacter xylosoxidans.	Ridderberg W, Wang M, Norskov-Lauritsen N.	J Clin Microbiol	10.1128/jcm.00728-12	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#57485	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47056
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Achromobacter insolitus (CCUG 47056, LMG 5997)

Name and taxonomic classification