Aggregatibacter segnis (CCUG 46700)

Name: Aggregatibacter segnis (CCUG 46700)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 152406

Type strain

Culture col. no. CCUG 46700

NCBI tax ID(s) 739

Special Collections CCUG

Links

Aggregatibacter segnis CCUG 46700 is a microaerophile, mesophilic prokaryote that was isolated from Human abscess,50-yr-old woman.

microaerophile mesophilic genome sequence

Name and taxonomic classification

SI-ID 110766

CCUG 46700

@ref 20215

Last LPSN update 2025-12-16 10:06:34

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pasteurellales

Family Pasteurellaceae

Genus Aggregatibacter

Species Aggregatibacter segnis

Full scientific name Aggregatibacter segnis (Kilian 1977) Nørskov-Lauritsen and Kilian 2006

Synonyms (1)

Haemophilus segnis

BacDive ID	Other strains from **Aggregatibacter segnis** (42)	Type strain
11755	A. segnis HK316, DSM 21418, ATCC 33393, CCUG 10787, ... (type strain)
136051	A. segnis ANA 45, CIP 102164
137889	A. segnis 42-86, CIP 102120
137977	A. segnis 342-86, CIP 102350
138696	A. segnis 70-86, CIP 102141
139181	A. segnis 371.84, CIP 100870
139524	A. segnis 38.87, CIP 102796
142795	A. segnis CCUG 14859
142796	A. segnis CCUG 14860
142797	A. segnis CCUG 14861
142798	A. segnis CCUG 14862
143258	A. segnis CCUG 18088, MCCM 03015
143394	A. segnis CCUG 18888
143966	A. segnis CCUG 22129
144312	A. segnis CCUG 24524, MCCM 00313
144659	A. segnis CCUG 26123
144685	A. segnis CCUG 26210 A
145465	A. segnis CCUG 28604
145847	A. segnis CCUG 29771
147296	A. segnis CCUG 33321
148067	A. segnis CCUG 34757
148526	A. segnis CCUG 35594
148845	A. segnis CCUG 36144, MCCM 00286
149853	A. segnis CCUG 38557
150310	A. segnis CCUG 39605
150475	A. segnis CCUG 41394
150649	A. segnis CCUG 41855
151955	A. segnis CCUG 45340
152822	A. segnis CCUG 47710
153213	A. segnis CCUG 48771
153409	A. segnis CCUG 49495
153476	A. segnis CCUG 49706
153966	A. segnis CCUG 51794
153967	A. segnis CCUG 51795
153968	A. segnis CCUG 51796
153969	A. segnis CCUG 51797
153970	A. segnis CCUG 51798
153971	A. segnis CCUG 51799
154314	A. segnis CCUG 53043 A
154596	A. segnis CCUG 54525
155355	A. segnis CCUG 57436
156666	A. segnis CCUG 63997

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.3
125438		93.655
125438	negative	97.978

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
57312	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
57312	microaerophile
125439	obligate aerobe	93.3

Spore formation

@ref	Spore formation	Confidence
125439		99.6
125438		90.988

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68377	15824 ChEBI	D-fructose	+	builds acid from	from API NH
68377	17634 ChEBI	D-glucose	+	builds acid from	from API NH
68377	17306 ChEBI	maltose	+	builds acid from	from API NH
68377	18257 ChEBI	ornithine	-	degradation	from API NH
68377	17992 ChEBI	sucrose	+	builds acid from	from API NH
68377	27897 ChEBI	tryptophan	-	energy source	from API NH
68377	16199 ChEBI	urea	-	hydrolysis	from API NH

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68377	35581 ChEBI	indole		from API NH

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68377	35581 ChEBI	indole	-	from API NH

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68377	alkaline phosphatase	+	3.1.3.1	from API NH
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68377	beta-galactosidase	-	3.2.1.23	from API NH
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68377	gamma-glutamyltransferase	-	2.3.2.2	from API NH
68382	leucine arylamidase	+	3.4.11.1	from API zym
68377	lipase	-		from API NH
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68377	ornithine decarboxylase	-	4.1.1.17	from API NH
68377	proline-arylamidase	-	3.4.11.5	from API NH
68382	trypsin	-	3.4.21.4	from API zym
68377	tryptophan deaminase	-	4.1.99.1	from API NH
68377	urease	-	3.5.1.5	from API NH
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
57312	-	+	-	-	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API NH

@ref	PEN	GLU	FRU	MAL	SAC	ODC	URE	LIP	PAL	beta GAL	ProA	GGT	IND
57312	not determinedn.d.	+	+	+	+	-	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	#Female
#Host Body-Site	#Other	#Abscess
#Infection	#Patient	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
57312	Human abscess,50-yr-old woman	2002-07-01	Skövde	Sweden	SWE	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM313009v1 assembly for Aggregatibacter segnis CCUG 46700	scaffold	GCA_003130095	739.8	2868664360	739	76.64

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aggregatibacter segnis CCUG 46700
NCBI: GCA_003130095

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.60	no
125439	motility	BacteriaNetⓘ	no	51.50	no
125439	gram_stain	BacteriaNetⓘ	negative	99.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Aggregatibacter segnis CCUG 46700
NCBI: GCA_003130095.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.98	no
125438	anaerobic	anaerobicⓘ	no	93.35	yes
125438	aerobic	aerobicⓘ	no	89.11	no
125438	spore-forming	spore-formingⓘ	no	90.99	no
125438	thermophilic	thermophileⓘ	no	98.47	yes
125438	flagellated	motile2+ⓘ	no	93.66	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#57312	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 46700
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68377	Automatically annotated from API NH .
#68382	Automatically annotated from API zym .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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