Aggregatibacter segnis (CCUG 51794)

Name: Aggregatibacter segnis (CCUG 51794)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 153966

Type strain

Culture col. no. CCUG 51794

NCBI tax ID(s) 739

Special Collections CCUG

Links

Aggregatibacter segnis CCUG 51794 is a microaerophile, mesophilic prokaryote that was isolated from Human sputum,chronic bronchitis.

microaerophile mesophilic genome sequence

Name and taxonomic classification

SI-ID 303126

CCUG 51794

@ref 20215

Last LPSN update 2025-12-16 10:06:57

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pasteurellales

Family Pasteurellaceae

Genus Aggregatibacter

Species Aggregatibacter segnis

Full scientific name Aggregatibacter segnis (Kilian 1977) Nørskov-Lauritsen and Kilian 2006

Synonyms (1)

Haemophilus segnis

BacDive ID	Other strains from **Aggregatibacter segnis** (42)	Type strain
11755	A. segnis HK316, DSM 21418, ATCC 33393, CCUG 10787, ... (type strain)
136051	A. segnis ANA 45, CIP 102164
137889	A. segnis 42-86, CIP 102120
137977	A. segnis 342-86, CIP 102350
138696	A. segnis 70-86, CIP 102141
139181	A. segnis 371.84, CIP 100870
139524	A. segnis 38.87, CIP 102796
142795	A. segnis CCUG 14859
142796	A. segnis CCUG 14860
142797	A. segnis CCUG 14861
142798	A. segnis CCUG 14862
143258	A. segnis CCUG 18088, MCCM 03015
143394	A. segnis CCUG 18888
143966	A. segnis CCUG 22129
144312	A. segnis CCUG 24524, MCCM 00313
144659	A. segnis CCUG 26123
144685	A. segnis CCUG 26210 A
145465	A. segnis CCUG 28604
145847	A. segnis CCUG 29771
147296	A. segnis CCUG 33321
148067	A. segnis CCUG 34757
148526	A. segnis CCUG 35594
148845	A. segnis CCUG 36144, MCCM 00286
149853	A. segnis CCUG 38557
150310	A. segnis CCUG 39605
150475	A. segnis CCUG 41394
150649	A. segnis CCUG 41855
151955	A. segnis CCUG 45340
152406	A. segnis CCUG 46700
152822	A. segnis CCUG 47710
153213	A. segnis CCUG 48771
153409	A. segnis CCUG 49495
153476	A. segnis CCUG 49706
153967	A. segnis CCUG 51795
153968	A. segnis CCUG 51796
153969	A. segnis CCUG 51797
153970	A. segnis CCUG 51798
153971	A. segnis CCUG 51799
154314	A. segnis CCUG 53043 A
154596	A. segnis CCUG 54525
155355	A. segnis CCUG 57436
156666	A. segnis CCUG 63997

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	98.8
125438		94.417
125438	negative	97.978

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
59317	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
59317	microaerophile
125439	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.4
125438		92.739

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Human
#Host Body Product	#Fluids
#Infection	#Patient

Isolation

@ref	Sample type	Sampling date	Country	Country ISO 3 Code	Continent
59317	Human sputum,chronic bronchitis	1973	Denmark	DNK	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM313007v1 assembly for Aggregatibacter segnis HK_296	scaffold	GCA_003130075	739.7	2858062307	739	75.73

Genome browser: GCA_003130075

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aggregatibacter segnis strain HK_296
PATRIC: 739.7

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.40	no
125439	motility	BacteriaNetⓘ	yes	58.40	no
125439	gram_stain	BacteriaNetⓘ	negative	98.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Aggregatibacter segnis strain HK_296
PATRIC: 739.7

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.98	no
125438	anaerobic	anaerobicⓘ	no	94.07	yes
125438	spore-forming	spore-formingⓘ	no	92.74	no
125438	aerobic	aerobicⓘ	no	88.06	yes
125438	thermophilic	thermophileⓘ	no	98.97	yes
125438	flagellated	motile2+ⓘ	no	94.42	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#59317	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 51794
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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