Streptomyces flavovirens DSM 40062 is a spore-forming bacterium that builds an aerial mycelium and produces antibiotic compounds.
antibiotic compound production spore-forming genome sequence 16S sequence Bacteria
SI-ID 216643
| @ref 20215 |
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Last LPSN update
2026-02-09 11:21:37 |
| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Kitasatosporales |
| Family Streptomycetaceae |
| Genus Streptomyces |
| Species Streptomyces flavovirens |
| Full scientific name Streptomyces flavovirens (Waksman 1923) Waksman and Henrici 1948 (Approved Lists 1980) |
| Synonyms (4) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 9244 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | Medium recipe at MediaDive  | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water | ||
| 19397 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 19397 | ISP 3 | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |||
| 19397 | ISP 4 | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |||
| 19397 | ISP 5 | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |||
| 9244 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | Medium recipe at MediaDive | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 20.0 g/l Starch 10.0 g/l (NH4)2SO4 2.0 g/l CaCO3 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l NaCl 1.0 g/l FeSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water |
| @ref | Spore description | Spore formation | |
|---|---|---|---|
| 19397 | Formation of spore chains: rectiflixibilis,spore surface: smooth |
| @ref | Salt | Growth | Tested relation | Concentration | |
|---|---|---|---|---|---|
| 19397 | NaCl | positive | maximum | 2.5 % |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 19397 | 22599 ChEBI | arabinose | + | ||
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 19397 | 62968 ChEBI | cellulose | - | ||
| 68368 | 16947 ChEBI | citrate | + | assimilation | from API 20E |
| 19397 | 28757 ChEBI | fructose | + | ||
| 68368 | 5291 ChEBI | gelatin | + | hydrolysis | from API 20E |
| 19397 | 17234 ChEBI | glucose | + | ||
| 68368 | 25094 ChEBI | lysine | - | degradation | from API 20E |
| 19397 | 29864 ChEBI | mannitol | + | ||
| 19397 | 17268 ChEBI | myo-inositol | - | ||
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 19397 | 16634 ChEBI | raffinose | - | ||
| 19397 | 26546 ChEBI | rhamnose | + | ||
| 19397 | 17992 ChEBI | sucrose | - | ||
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| 19397 | 18222 ChEBI | xylose | + |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68368 | gelatinase | + | from API 20E | |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
Global distribution of 16S sequence DQ026635 (>99% sequence identity) for Streptomyces from Microbeatlas 
 Aquatic Samples |
286 |
 Soil Samples |
2441 |
 Animal Samples |
1009 |
 Plant Samples |
294 |
| Total Samples | 4030 |
| @ref | Description | Assembly level | INSDC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|
| 124043 | ASM3953588v1 assembly for Streptomyces flavovirens JCM 4578 | contig | GCA_039535885   | 52258 | 70.24 | |
| 124043 | ASM4265101v1 assembly for Streptomyces flavovirens CCM 3243 | contig | GCA_042651015 | 52258 | 63.62 | |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Streptomyces flavovirens gene for 16S rRNA, partial sequence, strain: NBRC 12771 | AB184133 | 1473 |  | 52258 | |
| 20218 | Streptomyces flavovirens gene for 16S rRNA, partial sequence, strain: NBRC 3412 | AB184832 | 1477 | | 52258 | |
| 20218 | Streptomyces flavovirens 16S ribosomal RNA gene, partial sequence | U72171 | 268 | | 52258 | |
| 9244 | Streptomyces flavovirens strain NRRL B-2685 16S ribosomal RNA gene, partial sequence | DQ026635 | 1495 | | 52258 | |
| 67770 | Streptomyces flavovirens gene for 16S rRNA, partial sequence, strain: NBRC 3197 | AB184827 | 1472 | | 52258 | |
| 67770 | Streptomyces flavovirens gene for 16S rRNA, partial sequence, strain: NBRC 3716 | AB184834 | 1472 | | 52258 | |
| 124043 | Streptomyces flavovirens gene for 16S rRNA, partial sequence. | AB122708 | 564 | | 52258 | |
| 124043 | Streptomyces flavovirens strain CCM 3243 16S ribosomal RNA gene, partial sequence. | MT760096 | 1356 | | 52258 | |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Enzymology | Molecular detection of streptomycin-producing streptomycetes in Brazilian soils. | Huddleston AS, Cresswell N, Neves MC, Beringer JE, Baumberg S, Thomas DI, Wellington EM. | Appl Environ Microbiol | 10.1128/aem.63.4.1288-1297.1997 | 1997 | |
| Biotechnology | Response of the mushroom pathogen Cladobotryum mycophilum to prochloraz and metrafenone fungicides and Streptomyces flavovirens actinobacteria. | Lukovic J, Potocnik I, Santric L, Radivojevic L, Todorovic B, Milijasevic-Marcic S, Szucs A, Kredics L, Vagvolgyi C, Hatvani L. | J Environ Sci Health B | 10.1080/03601234.2022.2096360 | 2022 | |
| Phylogeny | Identification of environmental Actinobacteria in buildings by means of chemotaxonomy, 16S rRNA sequencing, and MALDI-TOF MS. | Chudzik A, Jalkanen K, Taubel M, Szponar B, Pasciak M. | Microbiol Spectr | 10.1128/spectrum.03596-23 | 2024 | |
| Streptomyces-Based Bioformulation to Control Wilt of Morchella sextelata Caused by Pestalotiopsis trachicarpicola. | Li B, Liu Y, Mao A, Hu Z, Li J. | J Fungi (Basel) | 10.3390/jof11060452 | 2025 | | |
| Pathogenicity | Impact of a native Streptomyces flavovirens from mushroom compost on green mold control and yield of Agaricus bisporus. | Santric L, Potocnik I, Radivojevic L, Umiljendic JG, Rekanovic E, Duduk B, Milijasevic-Marcic S. | J Environ Sci Health B | 10.1080/03601234.2018.1474559 | 2018 | |
| Genetics | Macrogenomic Analysis Reveals Soil Microbial Diversity in Different Regions of the Antarctic Peninsula. | Qu J, Lu X, Liu T, Qu Y, Xing Z, Wang S, Jing S, Zheng L, Wang L, Wang X. | Microorganisms | 10.3390/microorganisms12122444 | 2024 | |
| Phylogeny | Diversity of Culturable Bacteria Isolated from Highland Barley Cultivation Soil in Qamdo, Tibet Autonomous Region. | Pan HU, Zhou J, Dawa Z, Dai Y, Zhang Y, Yang H, Wang C, Liu H, Zhou H, Lu X, Tian Y. | Pol J Microbiol | 10.33073/pjm-2021-008 | 2021 | |
| Genetics | Functional and comparative genome analysis of novel virulent actinophages belonging to Streptomyces flavovirens. | Sharaf A, Mercati F, Elmaghraby I, Elbaz RM, Marei EM. | BMC Microbiol | 10.1186/s12866-017-0940-7 | 2017 | |
| Metabolism | Indigenous soil bacteria with the combined potential for hydrocarbon consumption and heavy metal resistance. | Ali N, Dashti N, Al-Mailem D, Eliyas M, Radwan S. | Environ Sci Pollut Res Int | 10.1007/s11356-011-0624-z | 2012 | |
| Phylogeny | Reclassification of Streptomyces nigrifaciens as a later synonym of Streptomyces flavovirens; Streptomyces citreofluorescens, Streptomyces chrysomallus subsp. chrysomallus and Streptomyces fluorescens as later synonyms of Streptomyces anulatus; Streptomyces chibaensis as a later synonym of Streptomyces corchorusii; Streptomyces flaviscleroticus as a later synonym of Streptomyces minutiscleroticus; and Streptomyces lipmanii, Streptomyces griseus subsp. alpha, Streptomyces griseus subsp. cretosus and Streptomyces willmorei as later synonyms of Streptomyces microflavus. | Lanoot B, Vancanneyt M, Van Schoor A, Liu Z, Swings J. | Int J Syst Evol Microbiol | 10.1099/ijs.0.63391-0 | 2005 | |
| Phylogeny | Taxonomic evaluation of the Streptomyces griseus clade using multilocus sequence analysis and DNA-DNA hybridization, with proposal to combine 29 species and three subspecies as 11 genomic species. | Rong X, Huang Y. | Int J Syst Evol Microbiol | 10.1099/ijs.0.012419-0 | 2010 | |
| Advances in Antarctic Research for Antimicrobial Discovery: A Comprehensive Narrative Review of Bacteria from Antarctic Environments as Potential Sources of Novel Antibiotic Compounds Against Human Pathogens and Microorganisms of Industrial Importance. | Nunez-Montero K, Barrientos L. | Antibiotics (Basel) | 10.3390/antibiotics7040090 | 2018 | | |
| Metabolism | Stereoselective formation of a K-region dihydrodiol from phenanthrene by Streptomyces flavovirens. | Sutherland JB, Freeman JP, Selby AL, Fu PP, Miller DW, Cerniglia CE. | Arch Microbiol | 10.1007/bf00248965 | 1990 | |
| Streptomyces Dominate the Soil Under Betula Trees That Have Naturally Colonized a Red Gypsum Landfill. | Zappelini C, Alvarez-Lopez V, Capelli N, Guyeux C, Chalot M. | Front Microbiol | 10.3389/fmicb.2018.01772 | 2018 | | |
| Phylogeny | Phylogenetic relationships in the family Streptomycetaceae using multi-locus sequence analysis. | Labeda DP, Dunlap CA, Rong X, Huang Y, Doroghazi JR, Ju KS, Metcalf WW. | Antonie Van Leeuwenhoek | 10.1007/s10482-016-0824-0 | 2017 | |
| Metabolism | Benadrostin, new inhibitor of poly(ADP-ribose) synthetase, produced by actinomycetes. II. Structure determination. | Yoshida S, Naganawa H, Aoyagi T, Takeuchi T, Umezawa H. | J Antibiot (Tokyo) | 10.7164/antibiotics.41.1015 | 1988 | |
| Metabolism | Benadrostin, new inhibitor of poly(ADP-ribose) synthetase, produced by actinomycetes. I. Taxonomy, production, isolation, physico-chemical properties and biological activities. | Aoyagi T, Yoshida S, Harada S, Okuyama A, Nakayama C, Yoshida T, Hamada M, Takeuchi T, Umezawa H. | J Antibiot (Tokyo) | 10.7164/antibiotics.41.1009 | 1988 | |
| Metabolism | [Formation of antibiotic JI-20B by a culture of Streptomyces flavovirens]. | Ivanitskaia LP, Singal EM, Taig MM, Zhdanovich IuV, Vostrov SN. | Antibiotiki | 1982 | | |
| Metabolism | Actinobacteria associated with Chinaberry tree are diverse and show antimicrobial activity. | Zhao K, Li J, Shen M, Chen Q, Liu M, Ao X, Liao D, Gu Y, Xu K, Ma M, Yu X, Xiang Q, Chen J, Zhang X, Penttinen P. | Sci Rep | 10.1038/s41598-018-29442-2 | 2018 | |
| Metabolism | Enzymatical and microbial degradation of cyclic dipeptides (diketopiperazines). | Perzborn M, Syldatk C, Rudat J | AMB Express | 10.1186/2191-0855-3-51 | 2013 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive15163.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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