Name: Streptomyces flavovirens DSM 40062
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15163

Type strain:

Species: Streptomyces flavovirens

Culture col. no.: DSM 40062, ATCC 19758, ATCC 3320, CBS 129.20, CBS 496.68, IFO 12771, IFO 3412, IMRU 3320, ISP 5062, JCM 4035, JCM 4578, KCC S-0035, NBRC 12771, NBRC 3412, NRRL B-1329, NRRL B-2685, RIA 1038, RIA 635, BCRC 13689, CBS 189.75, CBS 279.30, CCM 3243, CGMCC 4.0575, HAMBI 1007, HUT 6019, HUT 6053, ICMP 479, IFO 3197, IFO 3716, IMET 40280, LMG 20516, NBRC 3197, NBRC 3716, VKM Ac-1723, VTT E-052937, VTT E-82159

Strain history: KCC S-0035 <-- T. Yamaguchi (IAM 0069) <-- MTHU 64 <-- S. A. Waksman IMRU 3320.

NCBI tax ID(s): 52258 (species)

SI-ID 216643

ATCC 3320, ATCC 19758, IFO 12771, DSM 40062, IFO 3412, JCM 4035, CCM 3243, CCRC 13689, HUT 6019, HUT 6053, IFO 3197, IFO 3716, IMET 40280, NRRL B-1329, NRRL B-2685, VKM Ac-1723, JCM 4578, CBS 129.20, CBS 279.30, AS 4.575, NBRC 12771, NBRC 3197, NBRC 3412, NBRC 3716, LMG 20516, BCRC 13689, HAMBI 1007, ICMP 479, CGMCC 4.0575, VTT E-82159, VTT E-052937, IAM 0069

Other strains from Streptomyces flavovirens

S. flavovirens DSM 40071, ATCC 19791, CBS 543.68, ...
S. flavovirens Heim, DSM 40323, ATCC 25452, CBS ...
S. flavovirens DSM 46453, IMET 40610, IPV 169x
S. flavovirens STI43408(IMET), IFO 13489, INA ...
S. flavovirens ST005125(HKI), China, IMET 40341
S. flavovirens STI40342(IMET), 40342, N-220 "China", ...
S. flavovirens I. A. F. 45 CD, DSM 40990, ATCC ...
S. flavovirens MPB4-2, MPB4-2(A4), DSM 41966

Section

Streptomyces flavovirens DSM 40062 is a spore-forming, mesophilic bacterium that builds an aerial mycelium and produces antibiotic compounds.

antibiotic compound production
spore-forming
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces flavovirens**
	Full Scientific Name (LPSN)	Streptomyces flavovirens (Waksman 1923) Waksman and Henrici 1948 (Approved Lists 1980)

	Synonym	"Actinomyces* flavogriseus"*
	Synonym	"Actinomyces* flavovirens"*
	Synonym	Streptomyces nigrifaciens
	Synonym	Streptomyces flavogriseus

Information on morphological and physiological properties Morphology

[Ref.: #19397]	Colony color	Yellow
[Ref.: #19397]	Incubation period	10-14 days
[Ref.: #19397]	Cultivation medium used	ISP 2

[Ref.: #19397]	Colony color	Yellow
[Ref.: #19397]	Incubation period	10-14 days
[Ref.: #19397]	Cultivation medium used	ISP 3

[Ref.: #19397]	Colony color	Yellow
[Ref.: #19397]	Incubation period	10-14 days
[Ref.: #19397]	Cultivation medium used	ISP 4

[Ref.: #19397]	Colony color	Yellow
[Ref.: #19397]	Incubation period	10-14 days
[Ref.: #19397]	Cultivation medium used	ISP 5

[Ref.: #19397]	Multicellular complex forming ability	yes
[Ref.: #19397]	Multicellular complex name	Aerial Mycelium
[Ref.: #19397]	Multicellular complex color	White
[Ref.: #19397]	Medium Name (multicellularity)	ISP 2

[Ref.: #19397]	Multicellular complex forming ability	yes
[Ref.: #19397]	Multicellular complex name	Aerial Mycelium
[Ref.: #19397]	Multicellular complex color	Grey
[Ref.: #19397]	Medium Name (multicellularity)	ISP 3

[Ref.: #19397]	Multicellular complex forming ability	yes
[Ref.: #19397]	Multicellular complex name	Aerial Mycelium
[Ref.: #19397]	Multicellular complex color	Grey
[Ref.: #19397]	Medium Name (multicellularity)	ISP 4

[Ref.: #19397]	Multicellular complex forming ability	yes
[Ref.: #19397]	Multicellular complex name	Aerial Mycelium
[Ref.: #19397]	Multicellular complex color	Ivory
[Ref.: #19397]	Medium Name (multicellularity)	ISP 5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9244]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9244]

Culture medium growth

[Ref.: #9244]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9244]

Culture medium composition

expand / minimize

[Ref.: #19397]

Culture medium

ISP 2

[Ref.: #19397]

Culture medium growth

[Ref.: #19397]

Culture medium composition

expand / minimize

[Ref.: #19397]

Culture medium

ISP 3

[Ref.: #19397]

Culture medium growth

[Ref.: #19397]

Culture medium composition

expand / minimize

[Ref.: #19397]

Culture medium

ISP 4

[Ref.: #19397]

Culture medium growth

[Ref.: #19397]

Culture medium composition

expand / minimize

[Ref.: #19397]

Culture medium

ISP 5

[Ref.: #19397]

Culture medium growth

[Ref.: #19397]

Culture medium composition

expand / minimize

[Ref.: #9244]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #9244]

Culture medium growth

[Ref.: #9244]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9244]	growth	28 °C
[Ref.: #19397]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9244]	Temperature range	mesophilic
[Ref.: #19397]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19397]	Spore description	Formation of spore chains: rectiflixibilis,spore surface: smooth
[Ref.: #19397]	Ability of spore formation	yes

[Ref.: #9244]	Name of produced compound	actinomycin-complex
[Ref.: #20216]	Name of produced compound	Actinomycin complex

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19397]		NaCl		maximum	2.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19397]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19397]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #19397]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19397]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #19397]	mannitol ChEBI	+
[Ref.: #19397]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #19397]	raffinose ChEBI	-
[Ref.: #19397]	rhamnose ChEBI	+
[Ref.: #19397]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19397]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19397]	263	+	-	-	-	+	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence DQ026635 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	286
Soil Samples	2441
Animal Samples	1009
Plant Samples	294
Total Samples	4030

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9244]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19397]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces flavovirens gene for 16S rRNA, partial sequence, strain: NBRC 3197	AB184827	1472	ENA	52258 tax ID
[Ref.: #67770]	Streptomyces flavovirens gene for 16S rRNA, partial sequence, strain: NBRC 3716	AB184834	1472	ENA	52258 tax ID
[Ref.: #9244]	Streptomyces flavovirens strain NRRL B-2685 16S ribosomal RNA gene, partial sequence	DQ026635	1495	ENA	52258 tax ID
[Ref.: #20218]	Streptomyces flavovirens 16S ribosomal RNA gene, partial sequence	U72171	268	ENA	52258 tax ID	*
[Ref.: #20218]	Streptomyces flavovirens gene for 16S rRNA, partial sequence, strain: NBRC 12771	AB184133	1473	ENA	52258 tax ID	*
[Ref.: #20218]	Streptomyces flavovirens gene for 16S rRNA, partial sequence, strain: NBRC 3412	AB184832	1477	ENA	52258 tax ID	*

Availability in culture collections External links

[Ref.: #9244]

Culture collection no.

DSM 40062, ATCC 19758, ATCC 3320, CBS 129.20, CBS 496.68, IFO 12771, IFO 3412, IMRU 3320, ISP 5062, JCM 4035, JCM 4578, KCC S-0035, NBRC 12771, NBRC 3412, NRRL B-1329, NRRL B-2685, RIA 1038, RIA 635, BCRC 13689, CBS 189.75, CBS 279.30, CCM 3243, CGMCC 4.0575, HAMBI 1007, HUT 6019, HUT 6053, ICMP 479, IFO 3197, IFO 3716, IMET 40280, LMG 20516, NBRC 3197, NBRC 3716, VKM Ac-1723, VTT E-052937, VTT E-82159

[Ref.: #84267]

SI-ID 216643

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Enzymatical and microbial degradation of cyclic dipeptides (diketopiperazines).	Perzborn M, Syldatk C, Rudat J	AMB Express	10.1186/2191-0855-3-51	2013	*

References

#9244

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40062

#19397

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#84267

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID216643.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Streptomyces flavovirens in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF